vame.csv_to_npy pose confidence is hard coded as 0.99

[stowerslab]

i was wondering why vame.create_trainset() was throwing empty array errors and found out that one of my columns in the NPY file was still empty even when i lowered the pose confidence threshold

i think line 5 in the code block below is the issue

    for i in range(bodyparts*2):
        if i % 2 == 0:
            idx +=1
        seq = body_position[:,i]
        seq[con_arr[idx,:]<.99] = np.NaN
        body_position_nan.append(seq)

[kvnlxm]

Thank you for bringing this up. The csv_to_numpy.py function is now updated and creates now the correct representation to create the training set and train VAME.

Cheers,
Kevin