LOVDnl/LOVD3

Issues

• Interface overhaul (bootstrap/tailwind)

  #624 opened 2 years ago by ifokkema
  2

• GeneTests should be GTR

  #657 opened 3 months ago by amalheiro
  2

• HGVS expression validation: Handle new VV warning

  #636 opened a year ago by ifokkema
  0

• Links to Orphanet no longer work

  #645 opened 7 months ago by ifokkema
  0

• Improve the selection and deselection of related diseases

  #642 opened 9 months ago by leicray
  0

• Use VV for the creation of all transcripts, remove the Mutalyzer code

  #639 opened 9 months ago by ifokkema
  0

• Finalize using VV for the creation of all transcripts, now include the mapping of variants.

  #640 opened 9 months ago by ifokkema
  0

• Take up the Clinical Classification columns

  #543 opened 3 years ago by ifokkema
  1

• Turning off the option for submitters to edit data disallows them from making an actual submission.

  #628 opened 2 years ago by ifokkema
  0

• Batch syntax / variant checker on LOVD.nl

  #575 opened 2 years ago by ifokkema
  0

• LOVD is not compatible with PHP 8.1

  #618 opened 2 years ago by ifokkema
  0

• Current issues with `lovd_getVariantInfo()`

  #581 opened 3 years ago by ifokkema
  4

• Variant syntax recognition and correction libraries, comparison with other tools, and dissemination.

  #573 opened 3 years ago by ifokkema
  0

• Improve the presentation of genomic locations

  #610 opened 2 years ago by leicray
  2

• Make genome builds configurable

  #550 opened 3 years ago by ifokkema
  0

• Allow for `/diseases/[OMIMID]` forwards.

  #591 opened 2 years ago by ifokkema
  0

• LOVD uses wrong protocol to open LRG web pages

  #599 opened 2 years ago by leicray
  1

• REST JSON API includes hidden curator names

  #590 opened 2 years ago by ifokkema
  0

• LOVD incompatible with PHP8

  #571 opened 3 years ago by ifokkema
  1

• Improve `lovd_getVariantInfo()` and `lovd_fixHGVS()`.

  #566 opened 3 years ago by ifokkema
  0

• Adapt VV library for recent change that throws warnings for silent corrections

  #583 opened 2 years ago by ifokkema
  0

• Handle variants unsupported by VV by translating them first

  #584 opened 3 years ago by ifokkema
  2

• Prevent mislinking of data during import

  #567 opened 3 years ago by ifokkema
  0

• Found two typos in the code; empty() not run on variables but on a boolean and a static string.

  #593 opened 2 years ago by angsm
  1

• getVariantInfo's HGVS check does not recognise white spaces

  #598 opened 2 years ago by loeswerkman
  1

• LOVD 3 banner displays wrong gene symbol

  #602 opened 2 years ago by leicray
  1

• Automatically lift over existing variants to all active GBs

  #600 opened 2 years ago by loeswerkman
  0

• Improve logging when changing transcripts mapped to a certain variant.

  #596 opened 3 years ago by ifokkema
  0

• Grant Curators authorization on Screenings without VOGs, if they have authorization on the Individual.

  #595 opened 3 years ago by ifokkema
  0

• Custom columns displayed in API retrieval call

  #592 opened 3 years ago by angsm
  4

• Implement VariantValidator for all genome builds in variant data entry form

  #562 opened 3 years ago by loeswerkman
  4

• Dynamically find and show all active GBs in the LOVD API

  #589 opened 3 years ago by loeswerkman
  0

• Current issues with `lovd_fixHGVS()`

  #580 opened 3 years ago by ifokkema
  1

• expired certificate for https://databases.lovd.nl/

  #585 opened 3 years ago by bmrobin
  2

• Variants.php syntax error ('search_VariantOnTranscript/DNA')

  #579 opened 3 years ago by angsm
  3

• Pre-selected items are not visible in multiple-selection list when list is not in focus

  #570 opened 3 years ago by ifokkema
  0

• Blind SSRF vulnrability on lovd3 database url

  #577 opened 3 years ago by s41n1k
  4

• Mark abandoned user accounts as such

  #578 opened 3 years ago by ifokkema
  0

• Make it easier to provide the classification method when using the submission API

  #568 opened 3 years ago by ifokkema
  0

• LOVD light's status page crashes

  #564 opened 3 years ago by ifokkema
  0

• Store genome build or transcript on which the variant was found.

  #560 opened 3 years ago by loeswerkman
  1

• Add/enable new GB

  #553 opened 3 years ago by loeswerkman
  2

• Allow users to deactivate a genome build

  #557 opened 3 years ago by loeswerkman
  2

• LOVD2-style API showing unique variant view with JSON output picks random entries for alternative genome build

  #548 opened 3 years ago by ifokkema
  0

• When importing, ignore case for selection lists

  #547 opened 3 years ago by ifokkema
  0

• bulk import

  #540 opened 3 years ago by summerghw
  4

• Warn Curators not to overwrite data from Submitters

  #542 opened 3 years ago by ifokkema
  1

• Selection list values surrounded with spaces are not cleaned when importing

  #539 opened 3 years ago by ifokkema
  0

• Support OMIM Phenotypic Series?

  #541 opened 3 years ago by ifokkema
  0

• Improve the inheritance in the Diseases VE

  #537 opened 3 years ago by ifokkema
  0