Pinned Repositories
airflow-imaging-plugins
Set of plugins helping to work with imaging data in Airflow.
algorithm-repository
Repository of functions or algorithms packaged (with Docker) for Algorithm Factory/Woken
ansible-airflow
Ansible role for the installation of Apache Airflow
data-tracking
This project contains scripts to extract metadata from DICOM files, NIFTI files and spreadsheets, and import them into a database.
docker-pgtap
Postgres pgTap test runner in docker
mip-microservices-infrastructure
Generic version of the scripts used to deploy the Medical Informatics Platform
MLM
Mulivariate analysis for Neuroimaging data.
mri-preprocessing-pipeline
MRI preprocessing pipeline
python-base-docker-images
Collection of Docker images for Python, including the base images created for the Algorithm Factory / Woken
woken
An orchestration platform for Docker containers running data mining algorithms
LREN CHUV's Repositories
LREN-CHUV/ansible-airflow
Ansible role for the installation of Apache Airflow
LREN-CHUV/airflow-imaging-plugins
Set of plugins helping to work with imaging data in Airflow.
LREN-CHUV/woken
An orchestration platform for Docker containers running data mining algorithms
LREN-CHUV/data-tracking
This project contains scripts to extract metadata from DICOM files, NIFTI files and spreadsheets, and import them into a database.
LREN-CHUV/python-base-docker-images
Collection of Docker images for Python, including the base images created for the Algorithm Factory / Woken
LREN-CHUV/algorithm-repository
Repository of functions or algorithms packaged (with Docker) for Algorithm Factory/Woken
LREN-CHUV/data-factory-airflow-dags
DAGs adapting the MRI preprocessing pipeline to Airflow
LREN-CHUV/MLM
Mulivariate analysis for Neuroimaging data.
LREN-CHUV/MSPM
Mass Multivariate methods for neurimaging data
LREN-CHUV/pfa-validator
Validation of the PFA model and its predictive algorithm
LREN-CHUV/portal-backend
Backend for the MIP portal
LREN-CHUV/woken-validation
Cross-validation module for Woken, using Spark and PFA
LREN-CHUV/data-db-setup
Setup for the database containing features data
LREN-CHUV/i2b2-import
This library provides functions to import data into an I2B2 DB schema
LREN-CHUV/mip-microservices-infrastructure
Generic version of the scripts used to deploy the Medical Informatics Platform
LREN-CHUV/woken-messages
Shared library containing the API and messages used in Woken applications
LREN-CHUV/dev-setup
LREN-CHUV/mip-cde-meta-db-setup
Meta DB setup based on our selection of common variables (MIP CDE)
LREN-CHUV/chronos
Fault tolerant job scheduler for Mesos which handles dependencies and ISO8601 based schedules
LREN-CHUV/ehr-to-i2b2
Import EHR data to I2B2.
LREN-CHUV/i2b2-flattening
Generate a flat CSV file from an I2B2 data (containing brain features, demographic data, etc).
LREN-CHUV/java-base-docker-images
Collection of Docker images for Java, including the base images created for the Algorithm Factory / Woken
LREN-CHUV/maracker
API aiming to make Human Brain Project's Medical Informatics Platform's developped apps deployment on Mesos Marathon easier.
LREN-CHUV/mip-brain-insights
A brain atlas viewer with region-specific data
LREN-CHUV/mip-communication-website
LREN-CHUV/mip-sdm
Software Delivery Machine for MIP
LREN-CHUV/Neuro_Atlasing
Matlab script for the segmentation of individual T1w images into brain regions defined by SPM12 Neuromephometric atlas.
LREN-CHUV/nmm-pipeline-output-merge
Merge individual MIP formatted output from the NMM pipeline into one single CSV file.
LREN-CHUV/portal-frontend
Frontend for the MIP portal
LREN-CHUV/web-analytics-demo
Launch the MIP web-analytics components using docker-compose