Pinned Repositories
ash_null_initialization
an investigate on initialization of ash
ash_warnings
an investigation on when and how ash generate em not converge warnings
ashr
An R package for adaptive shrinkage
BayeS
Bayesian Shrinkage Selection Sparsity
bayesprox
An algorithm to solve non-convex regularized generalized-lasso type of problems using proximal algorithms
BHq
Re-exploring the good ol' BHq
Bi-ASH
biashr
Comparing effects between two groups
cashr
`cashr`: Solve the correlated Empirical Bayes Normal Means problem, with applications to large-scale multiple testing
truncash
An exploratory project to control false discoveries in presence of correlation and heteroskedastic noise.
LSun's Repositories
LSun/cashr
`cashr`: Solve the correlated Empirical Bayes Normal Means problem, with applications to large-scale multiple testing
LSun/BayeS
Bayesian Shrinkage Selection Sparsity
LSun/truncash
An exploratory project to control false discoveries in presence of correlation and heteroskedastic noise.
LSun/ash_null_initialization
an investigate on initialization of ash
LSun/ash_warnings
an investigation on when and how ash generate em not converge warnings
LSun/ashr
An R package for adaptive shrinkage
LSun/bayesprox
An algorithm to solve non-convex regularized generalized-lasso type of problems using proximal algorithms
LSun/BHq
Re-exploring the good ol' BHq
LSun/Bi-ASH
LSun/biashr
Comparing effects between two groups
LSun/cashalpha
The alpha version of the `cashr` package
LSun/cashr_paper
Code and data resources accompanying Sun and Stephens (2018)
LSun/diagnostic_ashr
Diagnostic Plots for `ashr`
LSun/effect_calibration
a simulation study to demonstrate that bi-ash does a reasonably good job to calibrate inflation due to confounders.
LSun/etrunct
R package to compute moments of truncated t distribution
LSun/expression_precision_power
to explore the relationship between expression level and measurement precision, and their influence on power in differential expression/gene set enrichment studies; demonstrate how ash/bi-ash could improve traditional approaches using z-score/p-value only
LSun/l0reg
R package `l0reg`: Implement the Single Best Replacement (SBR) algorithm to solve $l_0$-regularized least squares
LSun/l0regalpha
Alpha version of `l0reg` package
LSun/OracleBayesMT
An exploratory project on Oracle Bayes Multiple Testing