LabNeuroCogDevel/anki_mratlas

Anki Deck from a MR atlas

This generates an anki deck with flashcards for each atlas roi.

Usage

To use the deck, see LabNeuroCogDevel/TTDaemonCards.

Generating

To generate a new atlas:

1. change atlas= in *bash files
2. run make all
3. Optionally, get predefined note type and cards by import json from LabNeuroCogDevel/TTDaemonCards via the CrowdAnki add-on.
4. import csv file

How

1. Atlas images built with AFNI's bundled TT_Daemon.
   • whereami to get mask
   • 3dCM to get roi center
   • afni to generate jpg
2. wikipedia summary generated with walle/wiki
3. csv notes imported into anki and exported with CrowdAnki

TODO

• use freesurfer labels (aparc)
• git submodules for created decks