/mrproto_sql

create and check sqlitedb of MR protocol settings

Primary LanguageShell

automation

setup in cron for foranw@rhea.

builds(00_regen_db.bash) and emails (email_cron.bash) nightly midnigth and at 1pm

build

./00_regen_db.bash to pull in everything

compare

./checksubj.bash to check a specific subject ./count_study_column.bash to see whats going on

MODIFIYING/ADDING

adding a new dicom item

  • hinfo:hinfo()
  • hinfo:printheader()
  • schema.sql:mrinfo
  • ./00_regen_db.bash
  • add tag to funcs.R:mergeBy

N.B. dicom_hinfo respects order of tags on cli (it doesnt not sort tags) tags for hinfo, printheader, and mrinfo table should all be in the same order

watchout for inconsitant names between different headers (see hinfo and dicom_from_dir.bash header options)