LabTranslationalArchitectomics/riboWaltz

Issues

• Short read inputs and questions with bamtolist & codon_usage_psite

  #81 opened 2 months ago by chenghongdeng
  5

• Metaprofile plot peak is higher at the stop codon

  #83 opened 3 months ago by aswathyseb
  2

• Question about codon_usage_psite, refseq_sep = " " not fixing

  #82 opened 5 months ago by JessieMinyan
  4

• psite_info error

  #39 opened 3 years ago by yeroslaviz
  7

• Q: Get the Codon Usage Index Table

  #80 opened 6 months ago by chenghongdeng
  3

• temporary offset (local maximum) mis-identification

  #79 opened 7 months ago by iraiosub
  3

• wired metaplot using meta profile_psite

  #78 opened 7 months ago by trista1115
  3

• riboWaltz run psite() function meet error

  #77 opened 8 months ago by Jiahuan90
  6

• Conda installation fails

  #76 opened 10 months ago by matthewfallan
  2

• Sample names restrictions?

  #75 opened 10 months ago by Jelinek-J
  2

• annotation table format

  #74 opened 10 months ago by Mahnaz-Shemirani
  10

• error occurred in the codon usage part

  #73 opened 10 months ago by shaymin84
  3

• some questions about Codon usage

  #67 opened a year ago by ELMMA-FUNNY
  6

• riboWaltz on galaxy.eu fails to run

  #71 opened a year ago by scholtzb
  13

• Questions about codon_usage_psite

  #72 opened a year ago by zzo-joe
  6

• Error in h(simpleError(msg, call)) : 在为'subseq'函数选择方法时评估'x'参数出了错: subscript contains invalid names

  #53 opened 3 years ago by z626093820
  11

• Error in condon_usage_psite() when measuring a-site

  #70 opened a year ago by theosusanto
  3

• Issues on codon_usage_psite: "error in evaluating the argument 'x' in selecting a method for function 'subseq': subscript contains invalid names"

  #69 opened a year ago by theosusanto
  6

• Error on codon_coverage

  #68 opened a year ago by theosusanto
  2

• psite_info & codon_usage_psite error in evaluating the argument 'x' in selecting a method for function 'subseq'

  #66 opened 2 years ago by ChristianRohde
  5

• Input query

  #65 opened 2 years ago by KONeill872
  1

• Why are some read lengths not in frame?

  #64 opened 2 years ago by weishwu
  5

• region_psite() error

  #63 opened 2 years ago by weishwu
  2

• error with codon_usage_psite()

  #61 opened 2 years ago by KONeill872
  6

• Would it be possible to find the P-site of novel intergenic genes?

  #62 opened 2 years ago by Dongxu-Zheng
  8

• psite error

  #59 opened 2 years ago by janhavikolhe
  7

• ribowaltz for R version 4.1.2

  #60 opened 2 years ago by dksenthil
  2

• Question about rends_heat (Error in `[.data.frame`(annotation, l_utr5 >= utr5l & l_cds > 2 * (cdsl + : object 'transcript' not found)

  #58 opened 2 years ago by cornecu
  2

• Inquiry about the article "riboWaltz: Optimization of ribosome P-site positioning in ribosome profiling data“

  #55 opened 2 years ago by z626093820
  4

• how to get the number of read extremities from psite plot

  #57 opened 3 years ago by cornecu
  2

• some quetions about codon_usage_psite( )

  #56 opened 3 years ago by ELMMA-FUNNY
  6

• Plot for "codon_usage_psite" sample comparison

  #46 opened 3 years ago by baibing7713661
  7

• Error in codon_usage_psite function

  #54 opened 3 years ago by agoldkamp
  1

• the problem of the p site of 30nt reads

  #52 opened 3 years ago by z626093820
  9

• bamtoist problem

  #50 opened 3 years ago by z626093820
  1

• how can i change colour and add the data tags above of the bar

  #51 opened 3 years ago by z626093820
  1

• there is no figure using command "rlength_distr"

  #49 opened 3 years ago by z626093820
  5

• codon_usage_psite problem

  #48 opened 3 years ago by z626093820
  2

• reads_list No results generated，No errors reported

  #47 opened 3 years ago by z626093820
  2

• Error using codon_usage_psite()

  #45 opened 3 years ago by GKok
  12

• C stack issue when running region_psite

  #44 opened 3 years ago by baibing7713661
  17

• Error Codon Coverage

  #43 opened 3 years ago by FranziMe
  8

• psite with yeast data

  #42 opened 3 years ago by quarkaffi
  4

• strange bug in region_psite()

  #40 opened 3 years ago by yeroslaviz
  3

• Multiple samples error in rlength_distr

  #41 opened 3 years ago by agoldkamp
  2

• How riboWaltz decided the CDS start and CDS end position?

  #38 opened 3 years ago by Xuan0318
  4

• Error: $ operator is invalid for atomic vectors during bamtolist

  #37 opened 4 years ago by quarkaffi
  6

• Dealing with multiple input bam files

  #36 opened 4 years ago by kdc1127
  4

• Vectorized input to `element_text()` is not officially supported. Codon_usage

  #35 opened 4 years ago by AlexFryd
  2

• create_annotation could not work on gtf file from ncbi

  #34 opened 4 years ago by Xuan0318
  13