LaserKate

3D-scanning

absences

AGF

The active spread of adaptive variation for reef resilience

AGF18_MachineLearning

Finding Heat tolerant corals for selective breeding

AGF18_RNAseq

RNAseq on larvae and juvenile AGF crosses

AGF2017Spathulata_BioOpen

AGF2018Field

Data and R scripts for Assisted Gene Flow corals (2018) outplanted at Davies Reef

Arif_Db

MassBleaching_SymbiontsNESP

Code for Quigley et al. Scientific Advances: Symbioses are restructured by repeated mass coral bleaching

MontiSymTransgen

LaserKate/AGF18_MachineLearning

Finding Heat tolerant corals for selective breeding

LaserKate/AGF18_RNAseq

RNAseq on larvae and juvenile AGF crosses

LaserKate/MassBleaching_SymbiontsNESP

Code for Quigley et al. Scientific Advances: Symbioses are restructured by repeated mass coral bleaching

LaserKate/MontiSymTransgen

LaserKate/3D-scanning

LaserKate/absences

LaserKate/AGF

The active spread of adaptive variation for reef resilience

LaserKate/AGF2017Spathulata_BioOpen

LaserKate/AGF2018Field

Data and R scripts for Assisted Gene Flow corals (2018) outplanted at Davies Reef

LaserKate/Arif_Db

LaserKate/Coral_Ilastik_Pipeline

Machine Learning pipeline for measuring coral survival, size, and colour

LaserKate/Experimental-evolution-of-coral-symbionts

Experimental data and R code of heat stress experiment with the selected strain C1 symbiont (21 generations of heat selection) in A.tenuis juveniles

LaserKate/Genome-wide-SNP-analysis-reveals-an-increase-in-adaptive-genetic-variation-through-selective-breedin

Molecular Ecology

LaserKate/KeppelsAGF19

Predicting selection-response gradients of heat tolerance in a wide-ranging reef-building coral

LaserKate/L-C-diversity-metric-OTU-diversity-metric-abundance-diversity-rareness-

#This code calculates the diversity of a community based on OTU similarity and abundance. #It was originally written for species and has been adapted for OTUs, including DNA sequence similarity for OTUs using the package ape #It also includes rarity, as the parameter q, where the importance of the rare species or OTU is q=0 (rare) to q->infinity (very abundant) #Please direct questions to: K.Quigley (katemarie.quigley@my.jcu.edu.au) #Citations---- #(1) #Quigley, K. M., Warner, P. A., Bay, L. K., & Willis, B. L. (2018). #Unexpected mixed-mode transmission and moderate genetic regulation of Symbiodinium communities in a brooding coral. #Heredity, 121(6), 524-536. #(2) #Leinster, Tom, and Christina A. Cobbold. #"Measuring diversity: the importance of species similarity." #Ecology 93.3 (2012): 477-489.

LaserKate/Magnetic_Island_Juveniles

Co-dynamics of Symbiodiniaceae and bacterial populations during the first year of symbiosis with Acropora tenuis juveniles

LaserKate/Maternal-Effects-Zoox

LaserKate/species_choice

Workshop

LaserKate/Symbiodiniaceae_Workshop

Materials associated with NSF funded Symbiodiniaceae Diversity Virtual Workshop 2021

LaserKate/Torda_Quigley_2021_SLiM_Interventions

Code and data for Torda and Quigley (2021) Drivers of adaptive capacity in wild populations: implications for genetic interventions