LaurieLecomte
Bioinformatician at IBIS, ULaval - Biology BSc and MSc - Computational and population genomics
Pinned Repositories
angsd_pipeline
delly_by_sample_20220916
fasta_dev1
genotype_SVs_SRLR
Genotype a set of candidate SVs using pangenome graphs
merge_SVs_SRLR
Combine SVs detected from both short and long read data prior to genotyping with genome graphs
ONT_data_processing
Pipeline for processing ONT sequencing data
SNPs_indels_SR
Call SNPs and indels from short read data
SVs_long_reads
SV calling pipeline from ONT data
SVs_short_reads
SV calling pipeline from short reads data
SVs_SNPs_indels_compgen
Population genomics analysis of SVs, SNPs and indels datasets for La Romaine Atlantic salmon
LaurieLecomte's Repositories
LaurieLecomte/genotype_SVs_SRLR
Genotype a set of candidate SVs using pangenome graphs
LaurieLecomte/SVs_short_reads
SV calling pipeline from short reads data
LaurieLecomte/SVs_SNPs_indels_compgen
Population genomics analysis of SVs, SNPs and indels datasets for La Romaine Atlantic salmon
LaurieLecomte/merge_SVs_SRLR
Combine SVs detected from both short and long read data prior to genotyping with genome graphs
LaurieLecomte/ONT_data_processing
Pipeline for processing ONT sequencing data
LaurieLecomte/SVs_long_reads
SV calling pipeline from ONT data
LaurieLecomte/SNPs_indels_SR
Call SNPs and indels from short read data
LaurieLecomte/angsd_pipeline
LaurieLecomte/delly_by_sample_20220916
LaurieLecomte/fasta_dev1
LaurieLecomte/gawn
Genome Annotation Without Nightmares
LaurieLecomte/genotyping_SV
Genotype SV in multiple samples sequenced with short-reads, using a catalog of SV
LaurieLecomte/jardin
Observations et images de mes aventures botaniques et maraîchères, classées par type de culture et regroupées par année.
LaurieLecomte/manta_by_chr_20220915
LaurieLecomte/PB_data_processing
Long-read sequencing data processing pipeline for PacBio Sequel II
LaurieLecomte/planets
Planets of the Solar System
LaurieLecomte/safo_paper
Various analysis for the Salvelinus fontinalis genome assembly paper
LaurieLecomte/smoove_by_sample_20220921
LaurieLecomte/sniffles2_20221105
LaurieLecomte/SNP_calling_pipeline_202106
SNP calling pipeline in Atlantic Salmon genomes
LaurieLecomte/SNP_calling_pipeline_202205
Upgraded SNP calling pipeline
LaurieLecomte/SR_SV
detecting SVs based on shorts-reads
LaurieLecomte/SVs_long_reads_PB
Call SVs from aligned PacBio long reads
LaurieLecomte/test_rep
This isn't the repo you're looking for.
LaurieLecomte/wgs_sample_preparation
Trim, Align to genome, Deduplicate, Realign WGS sequencing samples