Pinned Repositories
ascnii
View brain images in terminal using ASCII characters
binary
A package implementing the revolutionary BinarySequence for python
gradiator
command line tool to turn covariance matrices saved in .tsv or .csv files into gradients.
imdown
imdown (pronounce "I'm down") can be used to collect images from a directory tree and put them into a markdown file for markdown to compile to another format using [pandoc](https://pandoc.org/).
intro_to_mricrogl_scripting
Introduction to scripting with MRIcroGL to make nice plots of brain maps with less effort
junigraph
Command line tool to create visual representations of junifer pipeline as SVG files.
marker2nii
Command line tool to map markers back on the brain.
nirust
parcmerge
merge two distinct nifti parcellations, intended use is to combine cortical and subcortical parcellations
pymute
Mutation Testing for Python written in Rust
LeSasse's Repositories
LeSasse/ascnii
View brain images in terminal using ASCII characters
LeSasse/pymute
Mutation Testing for Python written in Rust
LeSasse/gradiator
command line tool to turn covariance matrices saved in .tsv or .csv files into gradients.
LeSasse/imdown
imdown (pronounce "I'm down") can be used to collect images from a directory tree and put them into a markdown file for markdown to compile to another format using [pandoc](https://pandoc.org/).
LeSasse/intro_to_mricrogl_scripting
Introduction to scripting with MRIcroGL to make nice plots of brain maps with less effort
LeSasse/nirust
LeSasse/binary
A package implementing the revolutionary BinarySequence for python
LeSasse/junigraph
Command line tool to create visual representations of junifer pipeline as SVG files.
LeSasse/kernelridgeclass
kernel ridge classification for scikit-learn based on KernelRidge regressor
LeSasse/marker2nii
Command line tool to map markers back on the brain.
LeSasse/pandoc-template
A template for using pandoc to create articles
LeSasse/seabornxt
A few handy extension plots using seaborn API.
LeSasse/D-CCA
A Decomposition-based Canonical Correlation Analysis for High-dimensional Datasets (JASA-20 paper)
LeSasse/parcmerge
merge two distinct nifti parcellations, intended use is to combine cortical and subcortical parcellations
LeSasse/BrainSpace_release
BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |
LeSasse/checkbids
Wrapper to run the bids validator from command line and validate each file in a root directory.
LeSasse/fmriprep_example
Just an example of how to use fMRIprep
LeSasse/freesurfer_example
template/example for using recon-all and inspecting output
LeSasse/gifs
LeSasse/julearn
Forschungszentrum Jülich Machine Learning Library
LeSasse/junilog
Extract information from junifer logs and provide them as convenient dataframes.
LeSasse/juniplot
Make some plots from junifer output for initial inspection.
LeSasse/multi
LeSasse/nimgen
LeSasse/nushell
my nushell config
LeSasse/pysankey
Create sankey charts using local scripts.
LeSasse/synapse-to-ipynb
Manage and synchronize Synapse notebooks with Jupyter notebooks.