LeebanY
Evolutionary biologist interested in using next-gen sequencing to answer questions in speciation.
Pinned Repositories
avian-comparative-genomics
Convergent-evolution-of-viviparity-in-Cyprinodontiformes
Comparative genomics project examining the role of convergent evolution in the independent origin of viviparity in Cyprinodontiformes. Steps include, aligning, chaining, netting, multiple sequence alignment of public and de-novo genomes, extraction of different genomic features, alignment of orthologs, analysis of convergent evolution at amino acid sites, inferring phylogenetic trees for every sequence, performing analysis to examine evolutionary rates for every protein and finally examining convergent evolution in non-coding regions.
D.montana_PoolSeq_DemoHistory
Goodeids_general
GoodeidsPhylogenomicsComplexDemography
This project investigated the evolutionary history of the Goodeidae. Repository contains scripts used to perform mapping, filtering and analysis.
ReinforcementBirdsProject
Initial commit bird project -- a new test for reinforcement
Speciation-continuum-Drosophila
Inferring demographic history and effective migration genome-wide in species pairs across Drosophila
Virilis_Comparative_genomics
Scripts for comparative genomics for the virilis group.
syri
Synteny and Rearrangement Identifier
LeebanY's Repositories
LeebanY/Convergent-evolution-of-viviparity-in-Cyprinodontiformes
Comparative genomics project examining the role of convergent evolution in the independent origin of viviparity in Cyprinodontiformes. Steps include, aligning, chaining, netting, multiple sequence alignment of public and de-novo genomes, extraction of different genomic features, alignment of orthologs, analysis of convergent evolution at amino acid sites, inferring phylogenetic trees for every sequence, performing analysis to examine evolutionary rates for every protein and finally examining convergent evolution in non-coding regions.
LeebanY/avian-comparative-genomics
LeebanY/D.montana_PoolSeq_DemoHistory
LeebanY/GoodeidsPhylogenomicsComplexDemography
This project investigated the evolutionary history of the Goodeidae. Repository contains scripts used to perform mapping, filtering and analysis.
LeebanY/Goodeids_general
LeebanY/ReinforcementBirdsProject
Initial commit bird project -- a new test for reinforcement
LeebanY/Speciation-continuum-Drosophila
Inferring demographic history and effective migration genome-wide in species pairs across Drosophila
LeebanY/Virilis_Comparative_genomics
Scripts for comparative genomics for the virilis group.