SOS-DNA: a systematic error Simulation and encoding Optimization System for DNA data storage channel
For a live demo, visit http://170.106.110.86/
In case that the web app doesn't response, you can also:
Clone or download this repository, and install the dependencies:
git clone https://github.com/WangLabTHU/SOSDNA
# install packages
# under python 3.x
pip install matplotlib numpy plotly seaborn streamlit scipy reedsolo prettytable
Navigate to the project folder, and run the app:
# move to the project folder
cd download/SOSDNA main
streamlit run main.py
Navigate to localhost:8501. You should see the app running in your broswer :)
Download the project and install the dependencie following the instructions above, and run the notebooks. Notebooks include:
- Analysis of Individual Stages of DNA data channel.ipynb (Corresponding to 2.2 of the paper)
- Step-by-step simulation.ipynb (Part 3.1 of the paper)
- Encoding Design.ipynb (Part 3.2 of the paper)
Code about the DNA Fountain code is adopted from https://github.com/TeamErlich/dna-fountain.