Pinned Repositories
ForwardGenomics
Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
gb2ptt
Convert a Genbank flat file to an NCBI ptt file
gbk2ptt
Converts a GenBank file (*.gbk) to an NCBI Protein Table (*.ptt) file
genomescope
Fast genome analysis from unassembled short reads
gggenomes
A grammar of graphics for comparative genomics
RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
Roary
Rapid large-scale prokaryote pan genome analysis
utilities
These are a collection of scripts we commonly use on the command line for exploring data and for documentation
LemoAlex's Repositories
LemoAlex/ForwardGenomics
Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
LemoAlex/gb2ptt
Convert a Genbank flat file to an NCBI ptt file
LemoAlex/gbk2ptt
Converts a GenBank file (*.gbk) to an NCBI Protein Table (*.ptt) file
LemoAlex/genomescope
Fast genome analysis from unassembled short reads
LemoAlex/gggenomes
A grammar of graphics for comparative genomics
LemoAlex/RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
LemoAlex/Roary
Rapid large-scale prokaryote pan genome analysis
LemoAlex/utilities
These are a collection of scripts we commonly use on the command line for exploring data and for documentation