Leo Poon's lab
The group account for sharing data and codes for reproducible researches. The group is under the supervision by Prof. Poon Lit Man Leo.
Hong Kong
Pinned Repositories
BA.1-BA.2-competitive-transmission-hamster
Analysis of NGS data from hamster samples
BA1_BA2_recombinant_HK
Detection of a BA.1/BA.2 recombinant in Hong Kong, February 2022
Check-primer-mismatch
The scripts are used for detecting the level of SARS-CoV-2 primer/probe mismatches against the GISIAD database.
Children-s-and-Adults-SARS-CoV-2-antibodies-responses
Children's and Adults' SARS-CoV-2 antibodies responses
HK-Delta-variants
Use of incoming travelers arriving at Hong Kong for genomic surveillance of SARS-CoV-2
mutations-under-sarscov2-vaccination
Parsing-SnpEff
Use SnpEff to annotate SNPs and parse the results into table for regular uses.
SNVs-comparison-table
The scripts for generating SNVs comparision table on different samples basing on the variant calling results from iVar.
SynMut
SynMut: An R Package for Designing Synonymously Mutated Sequences with Different Genomic Signatures
Vaccine-induced-selection-pressure-flu
Vaccine induced selection pressure on seasonal influenza in mice
Leo Poon's lab's Repositories
Leo-Poon-Lab/Parsing-SnpEff
Use SnpEff to annotate SNPs and parse the results into table for regular uses.
Leo-Poon-Lab/mutations-under-sarscov2-vaccination
Leo-Poon-Lab/Vaccine-induced-selection-pressure-flu
Vaccine induced selection pressure on seasonal influenza in mice
Leo-Poon-Lab/Check-primer-mismatch
The scripts are used for detecting the level of SARS-CoV-2 primer/probe mismatches against the GISIAD database.
Leo-Poon-Lab/Astrovirus
Leo-Poon-Lab/BA.1-BA.2-competitive-transmission-hamster
Analysis of NGS data from hamster samples
Leo-Poon-Lab/BA1_BA2_recombinant_HK
Detection of a BA.1/BA.2 recombinant in Hong Kong, February 2022
Leo-Poon-Lab/Children-s-and-Adults-SARS-CoV-2-antibodies-responses
Children's and Adults' SARS-CoV-2 antibodies responses
Leo-Poon-Lab/GEII
host Gene Expression under Influenza virus infection or Interferon stimulation (GEII)
Leo-Poon-Lab/HK-Delta-variants
Use of incoming travelers arriving at Hong Kong for genomic surveillance of SARS-CoV-2
Leo-Poon-Lab/SNVs-comparison-table
The scripts for generating SNVs comparision table on different samples basing on the variant calling results from iVar.
Leo-Poon-Lab/SynMut
SynMut: An R Package for Designing Synonymously Mutated Sequences with Different Genomic Signatures
Leo-Poon-Lab/USP30-AS1-regulates-antiviral-immunity
An Interferon-stimulated long non-coding RNA USP30-AS1 regulates antiviral immunity in influenza virus infection
Leo-Poon-Lab/analysis-Influenza-antibody-subclass-and-effector-functions
Influenza antibody subclass and effector functions from pandemic infection of children
Leo-Poon-Lab/Barcoded-random-primer-sequencing
Leo-Poon-Lab/Detection-of-B.1.1.529-variant-in-Hong-Kong
Detection of SARS-CoV-2 B.1.1.529 variant in Hong Kong
Leo-Poon-Lab/Lab-meeting-calendar
Leo-Poon-Lab/SARS-CoV-2-sVNT-diversity
Leo-Poon-Lab/SFLU_epitope_diveristy
SFLU_epitope_diveristy
Leo-Poon-Lab/VOC-SNPs-checking
The repository hosts the R scripts for checking the number of lineage defining SNPs appeared in the input genomes.