/gene-gini-matlab

codes used for calculating and analyzing Gini genes

Primary LanguageMATLAB

gene-gini-matlab

Codes for "What are housekeeping genes?" Chintan J. Joshi, Eyleen J. O’Rourke, Nathan E. Lewis --biorXiv link--

NOTES

Loading transcriptomics data (rnaData)

The transcriptomics data is required as a MATLAB structure containing following fields: a. gene: list of gene names b. value: a matrix whose each column contains the expression of genes across a tissue/context and each row contains expression of a gene across all tissues/contexts c. genesymbols (optional): any alternative gene names that the user may want to keep track of d. Tissue: names of conditions