Pinned Repositories
adipose_sQTLs
Atac-seq_Quality_Control_pipe
Atac-seq QC matrix
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
Cas9FateMapping
Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system
chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline
COS_public_release
Public release of code for analysis of RNA-Seq data from COS cohort
DDDNonCoding2017
Code for paper published in March, 2017 analysing the role of de novo mutations in severe developmental disorders (part of the deciphering developmental disorders project).
DMSO
Genome-wide-changes-in-lncRNA-alternative-splicing-and-cortical-patterning-in-autism
Human Postmortem ASD RNA-seq Analysis Parikshak et al 2016
LiangMa2017's Repositories
LiangMa2017/adipose_sQTLs
LiangMa2017/Atac-seq_Quality_Control_pipe
Atac-seq QC matrix
LiangMa2017/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
LiangMa2017/Cas9FateMapping
Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system
LiangMa2017/chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline
LiangMa2017/COS_public_release
Public release of code for analysis of RNA-Seq data from COS cohort
LiangMa2017/DDDNonCoding2017
Code for paper published in March, 2017 analysing the role of de novo mutations in severe developmental disorders (part of the deciphering developmental disorders project).
LiangMa2017/DMSO
LiangMa2017/Genome-wide-changes-in-lncRNA-alternative-splicing-and-cortical-patterning-in-autism
Human Postmortem ASD RNA-seq Analysis Parikshak et al 2016
LiangMa2017/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
LiangMa2017/gtex-pipeline
GTEx Consortium data production and analysis pipelines
LiangMa2017/loftee
LiangMa2017/MACS
MACS -- Model-based Analysis of ChIP-Seq
LiangMa2017/peer
A factor analysis package
LiangMa2017/pipelines_for_ChIP-seq_analysis
Pipelines for ChIP-seq analysis, such as peak calling, differential enrichment detection, and pausing index calculation for PolII.
LiangMa2017/Python_for_Data_Science
A rapid on-ramp primer for programmers who want to learn Python for doing data science research and development.
LiangMa2017/ricopili
Main ricopili repo for public releases
LiangMa2017/SPEAQeasy
SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
LiangMa2017/styles
Official repository for Citation Style Language (CSL) citation styles.
LiangMa2017/tabula-muris
Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
LiangMa2017/test1