/GraphTGI

A graph attention-based embedding model for predicting TF-target gene interactions.

Primary LanguagePython

GraphTGI

An graph attention-based model for predicting TF-target gene interactions. For details of the model, refer to this paper.

Overview

  • data/ contains the necessary dataset files;
  • main.py main function for GraphTGI.

Requirment

The main requirements are:

  • numpy==1.19.2
  • mxnet-cu102==1.6.0.post0
  • dgl-cu102==0.6.0.post1

useconda env create -f environment.yaml to set up the environment.

Cite

Please cite our paper if you use this code in your own work.