LicoriceLin

LicoriceLin's Stars

• rcedgar/palm_annot

  Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences

  Language:Python62

• harvardnlp/pytorch-struct

  Fast, general, and tested differentiable structured prediction in PyTorch

  Language:Jupyter Notebook1.1k92

• ml4bio/Dense-Homolog-Retrieval

  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

  Language:Python611

• soedinglab/MMseqs2-App

  MMseqs2 app to run on your workstation or servers

  Language:Vue5518

• speediedan/finetuning-scheduler

  A PyTorch Lightning extension that accelerates and enhances foundation model experimentation with flexible fine-tuning schedules.

  Language:Python604

• cytoscape/py4cytoscape

  Python library for calling Cytoscape Automation via CyREST

  Language:Python6915

• DLS5-Omics/multimolecule

  Language:Python111

• DeepGraphLearning/torchdrug

  A powerful and flexible machine learning platform for drug discovery

  Language:Python1.4k199

• dptech-corp/Uni-Core

  an efficient distributed PyTorch framework

  Language:Python11930

• Ugenteraan/Deep_Hierarchical_Classification

  PyTorch Implementation of Deep Hierarchical Classification for Category Prediction in E-commerce System

  Language:Python8520

• neo4j-contrib/django-neomodel

  Neomodel plugin for Django

  Language:Python28256

• urmi-21/orfipy

  Fast and flexible ORF finder

  Language:Python547

• serratus-bio/pangenome

  Language:Jupyter Notebook1

• awslabs/dgl-ke

  High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.

  Language:Python1.3k194

• thu-ml/tianshou

  An elegant PyTorch deep reinforcement learning library.

  Language:Python7.8k1.1k

• IndexThePlanet/Logan

  Logan Unitigs and Contigs

  863

• d2l-ai/d2l-en

  Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

  Language:Python23.2k4.3k

• soedinglab/hh-suite

  Remote protein homology detection suite.

  Language:C528132

• simon-r/PyParticles

  Particles simulation in python

  Language:Python8233

• soedinglab/MMseqs2

  MMseqs2: ultra fast and sensitive search and clustering suite

  Language:C1.4k190

• neo4j-contrib/neomodel

  An Object Graph Mapper (OGM) for the Neo4j graph database.

  Language:Python940231

• spetti/SMURF

  Language:Python12813

• labgem/PPanGGOLiN

  Build a partitioned pangenome graph from microbial genomes

  Language:Python23928

• castorini/anserini

  Anserini is a Lucene toolkit for reproducible information retrieval research

  Language:Java1k449

• graphia-app/graphia

  A visualisation tool for the creation and analysis of graphs

  Language:C++23220

• JDHarlingLee/GraPPLE

  Support scripts for the visualisation of pangenome analyses in Graphia

  Language:Python171

• ababaian/serratus

  Ultra-deep search for novel viruses

  Language:Jupyter Notebook25333

• raghavan/PdfGptIndexer

  RAG based tool for indexing and searching PDF text data using OpenAI API and FAISS (Facebook AI Similarity Search) index, designed for rapid information retrieval and superior search accuracy.

  Language:Python65229

• allenai/science-parse

  Science Parse parses scientific papers (in PDF form) and returns them in structured form.

  Language:Java61886

• IBM/ICDAR2021-SLP

  ICDAR 2021 Competition on Scientific Literature Parsing

  345