LifeWorks
Systems Biology | Evolution | AI for Science | Multiscale Modeling
BioJazz studioUnited States
Pinned Repositories
alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
biojazz
Evolve and Design Biochemical Reaction Networks
bionetgen
Rule-based modeling framework
SARSCov2
Work on the hypergraph analysis of SARS-Cov-2
decomprolute
A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.
ProCaliper
ProteoMeter
LifeWorks's Repositories
LifeWorks/alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
LifeWorks/bionetgen
Rule-based modeling framework
LifeWorks/alphafold3
AlphaFold 3 inference pipeline.
LifeWorks/amalgkit
RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
LifeWorks/boltzina
Boltzina: Efficient and Accurate Virtual Screening via Docking-Guided Binding Prediction with Boltz-2
LifeWorks/CBRdb
A curated biochemical database that integrates and refines data from KEGG and ATLAS databases to support precise analyses of biochemical reaction data.
LifeWorks/code_elements_of_differentiable_programming
Code for the book "The Elements of Differentiable Programming".
LifeWorks/csubst
Molecular convergence detection
LifeWorks/cvxpylayers
Differentiable convex optimization layers
LifeWorks/d3flux
D3.js based visualizations of cobrapy metabolic models
LifeWorks/evoformer_representation
LifeWorks/FBAhv
FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)
LifeWorks/fitting-EGFR-signaling
LifeWorks/lattice_microbes
LifeWorks/lstarkeyigsm
Lipomyces starkeyi GSM Development
LifeWorks/neuromancer
Pytorch-based framework for solving parametric constrained optimization problems, physics-informed system identification, and parametric model predictive control.
LifeWorks/nfc_model
Code for the paper "Network Information Dynamics Renormalization Group"
LifeWorks/Prochlorococcus_Model
Materials for Dynamic allocation of carbon storage and nutrient-dependent exudation in a revised genome-scale model of Prochlorococcus paper
LifeWorks/ProstT5
Bilingual Language Model for Protein Sequence and Structure
LifeWorks/Protenix
A trainable PyTorch reproduction of AlphaFold 3.
LifeWorks/pykan
Kolmogorov Arnold Networks
LifeWorks/Rust
All Algorithms implemented in Rust
LifeWorks/rust_sbml
SBML parser + bindings to python
LifeWorks/rustyms
A rust library for parsing Pro Forma peptides and matching them against MS spectra
LifeWorks/sage
Proteomics search & quantification so fast that it feels like magic
LifeWorks/SCARAP
A toolkit for prokaryotic comparative genomics
LifeWorks/slides_elements_of_differentiable_programming
Slides for the book "The Elements of Differentiable Programming".
LifeWorks/swarms
The Enterprise-Grade Production-Ready Multi-Agent Orchestration Framework Join our Community: https://discord.com/servers/agora-999382051935506503
LifeWorks/Turing_Reaction_Networks
LifeWorks/zed-helix