LifeWorks
Systems Biology | Evolution | Multiscale Modeling | Machine Learning
Pacific Northwest National LaboratoryUnited States
Pinned Repositories
biojazz
Evolve and Design Biochemical Reaction Networks
bionetgen
Rule-based modeling framework
SARSCov2
Work on the hypergraph analysis of SARS-Cov-2
decomprolute
A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.
LifeWorks's Repositories
LifeWorks/SARSCov2
Work on the hypergraph analysis of SARS-Cov-2
LifeWorks/bionetgen
Rule-based modeling framework
LifeWorks/PPI_Synechococus_elongatus
The computational model of Synechococcus elongatus
LifeWorks/Awesome-VAEs
A curated list of awesome work on VAEs, disentanglement, representation learning, and generative models.
LifeWorks/d3flux
D3.js based visualizations of cobrapy metabolic models
LifeWorks/DeepLearning
Deep Learning (Python, C, C++, Java, Scala, Go)
LifeWorks/emll
some code for linlog model simulation
LifeWorks/FBAhv
FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)
LifeWorks/gitignore
A collection of useful .gitignore templates
LifeWorks/HelixCode
Emulating Helix editing in VS Code.
LifeWorks/HyperNetX
Python package for hypergraph analysis and visualization.
LifeWorks/LaPreprint
📝 A nicely formatted LaTeX preprint template
LifeWorks/MechAD
Python code for numerical simulations of self-assemly with optimization by automatic differentiation
LifeWorks/mlreview_notebooks
Notebooks for "A high bias low-variance introduction to Machine Learning for physicists."
LifeWorks/multi_assembly
LifeWorks/NERDSS
NonEquilibrium Reaction-Diffusion Self-assembly Simulator
LifeWorks/neuromancer
Pytorch-based framework for solving parametric constrained optimization problems, physics-informed system identification, and parametric model predictive control.
LifeWorks/nfsim
A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
LifeWorks/oxidizer
🛠️ Simple & Extensible Dotfile Manager using Rust Toolchains ⛓️
LifeWorks/Pattrix
Automatic design of gene regulatory mechanisms for spatial pattern formation
LifeWorks/persuasionSeqAnalysis
sequence analysis for persuasion projects
LifeWorks/Prochlorococcus_Model
Materials for Dynamic allocation of carbon storage and nutrient-dependent exudation in a revised genome-scale model of Prochlorococcus paper
LifeWorks/PyFBA
A python implementation of flux balance analysis to model microbial metabolism
LifeWorks/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
LifeWorks/SIEVE
Code and data for the SIEVE-Ub prediction algorithm for prediction of E3 ubiquitin ligase mimics
LifeWorks/SongCode
LifeWorks/SparseMacArthur
A package for infering the MacArthur's consumer-resource model
LifeWorks/talk-2018-essence-of-ad
The simple essence of automatic differentiation
LifeWorks/The-Art-of-Linear-Algebra-zh-CN
Graphic notes on Gilbert Strang's "Linear Algebra for Everyone", 线性代数的艺术中文版, 欢迎PR.
LifeWorks/ZhimuPy
A personal python utlility package