LifeWorks

alphafold3-pytorch

Implementation of Alphafold 3 in Pytorch

biojazz

Evolve and Design Biochemical Reaction Networks

bionetgen

Rule-based modeling framework

SARSCov2

Work on the hypergraph analysis of SARS-Cov-2

decomprolute

A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.

ProCaliper

ProteoMeter

LifeWorks/alphafold3-pytorch

Implementation of Alphafold 3 in Pytorch

LifeWorks/bionetgen

Rule-based modeling framework

LifeWorks/alphafold3

AlphaFold 3 inference pipeline.

LifeWorks/amalgkit

RNA-seq data amalgamation for a large-scale evolutionary transcriptomics

LifeWorks/boltzina

Boltzina: Efficient and Accurate Virtual Screening via Docking-Guided Binding Prediction with Boltz-2

LifeWorks/CBRdb

A curated biochemical database that integrates and refines data from KEGG and ATLAS databases to support precise analyses of biochemical reaction data.

LifeWorks/code_elements_of_differentiable_programming

Code for the book "The Elements of Differentiable Programming".

LifeWorks/csubst

Molecular convergence detection

LifeWorks/cvxpylayers

Differentiable convex optimization layers

LifeWorks/d3flux

D3.js based visualizations of cobrapy metabolic models

LifeWorks/evoformer_representation

LifeWorks/FBAhv

FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)

LifeWorks/fitting-EGFR-signaling

LifeWorks/lattice_microbes

LifeWorks/lstarkeyigsm

Lipomyces starkeyi GSM Development

LifeWorks/neuromancer

Pytorch-based framework for solving parametric constrained optimization problems, physics-informed system identification, and parametric model predictive control.

LifeWorks/nfc_model

Code for the paper "Network Information Dynamics Renormalization Group"

LifeWorks/Prochlorococcus_Model

Materials for Dynamic allocation of carbon storage and nutrient-dependent exudation in a revised genome-scale model of Prochlorococcus paper

LifeWorks/ProstT5

Bilingual Language Model for Protein Sequence and Structure

LifeWorks/Protenix

A trainable PyTorch reproduction of AlphaFold 3.

LifeWorks/pykan

Kolmogorov Arnold Networks

LifeWorks/Rust

All Algorithms implemented in Rust

LifeWorks/rust_sbml

SBML parser + bindings to python

LifeWorks/rustyms

A rust library for parsing Pro Forma peptides and matching them against MS spectra

LifeWorks/sage

Proteomics search & quantification so fast that it feels like magic

LifeWorks/SCARAP

A toolkit for prokaryotic comparative genomics

LifeWorks/slides_elements_of_differentiable_programming

Slides for the book "The Elements of Differentiable Programming".

LifeWorks/swarms

The Enterprise-Grade Production-Ready Multi-Agent Orchestration Framework Join our Community: https://discord.com/servers/agora-999382051935506503

LifeWorks/Turing_Reaction_Networks

LifeWorks/zed-helix