tipi4icy

Master: Devel:

tipi4icy is a collection of Icy plugins based on TiPi, a Java Toolkit for Inverse Problems and Imaging.

Eclipse

This project can be used in Eclipse, just copy/clone it into Eclipse workspace, then from Eclipse:

File -> import -> Existing project in workspace and choose TiPi folder.

Then Eclipse should automatically accept it as a known project.

To add the needed libraries to TiPi Eclipse project, move all the jars into a folder. Then in eclipse:

Right clic on TiPi project in package explorer -> Properties -> Java Build Path -> Libraries -> Add External jar and select all Library jar

There is a plugin to launch quickly and easily Icy from eclipse here.

MitivDeconvolution

MitivDeconvolution is the plugin that use linear algorithms to deconvolve 2D or 3D images.

The algorithms are wiener and linear conjugate gradients.

In ICY this plugin is available as a protocol.

MitivTotalVariation

MitivTotalVartion use the Total variation (non linear) to deconvolve 2D or 3D images.

In ICY this plugin is available as a protocol.

MitivGlobalDeconv

MitivGlobalDeconv (temporary name) is the plugin that is able to do blind deconvolution for microscopy images.

In progress...

The javadoc is auto generated at each push and is HERE

TiPi and tipi4icy have been developed as part of the MiTiV project.