Pinned Repositories
NADfinder
Call wide peaks for sequencing data
ChIPpeakAnno
Batch annotation and visualization of the peaks identified from ChIP-seq, ChIP-chip, ATAC-seq experiments or any experiments resulted in large number of chromosome ranges
CRISPRscreen
Analysis of High Throughput CRISPR Screening Data
CRISPRseek
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
CRISPRseekGUIDEseqBioc2017Workshop
Design gRNA with high specificity and efficacy using CRISPRseek package and GUIDE-seq data analysis using GUIDEseq package
CRISPRseekGUIDEseqBioc2020Workshop
Design target-specific gRNAs for CRSIPR genome editing system including base editor and prime editor using CRSIPRseek and GUIDEseq
GUIDEseq
A Bioconductor package for analyzing GUIDE-seq and CIRCLE-seq dataset to identify genome-wide offtargets using genome editing technology CRISPR
NADfinder
Bioinformatic analysis of NAD-seq data
OneStopRNAseq
OneStopRNAseq
LihuaJulieZhu's Repositories
LihuaJulieZhu/CRISPRseekGUIDEseqBioc2020Workshop
Design target-specific gRNAs for CRSIPR genome editing system including base editor and prime editor using CRSIPRseek and GUIDEseq
LihuaJulieZhu/CRISPRseek
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
LihuaJulieZhu/GUIDEseq
A Bioconductor package for analyzing GUIDE-seq and CIRCLE-seq dataset to identify genome-wide offtargets using genome editing technology CRISPR
LihuaJulieZhu/CRISPRseekGUIDEseqBioc2017Workshop
Design gRNA with high specificity and efficacy using CRISPRseek package and GUIDE-seq data analysis using GUIDEseq package
LihuaJulieZhu/ChIPpeakAnno
Batch annotation and visualization of the peaks identified from ChIP-seq, ChIP-chip, ATAC-seq experiments or any experiments resulted in large number of chromosome ranges
LihuaJulieZhu/CRISPRscreen
Analysis of High Throughput CRISPR Screening Data
LihuaJulieZhu/NADfinder
Bioinformatic analysis of NAD-seq data
LihuaJulieZhu/OneStopRNAseq