LinZzzzzzzzz

LinZzzzzzzzz's Stars

• PDB-REDO/dssp

  Application to assign secondary structure to proteins

  Language:C++16819

• minghao2016/DSSP_implt

  Programming project (Python) - Implementation of the DSSP method (Secondary Structure Assignment)

  21

• brentp/align

  sequence alignment. global, local, glocal.

  Language:Python4014

• jeffdaily/parasail

  Pairwise Sequence Alignment Library

  Language:C24334

• ShintaroMinami/PyDSSP

  A simplified implementation of DSSP algorithm for PyTorch and NumPy

  Language:Python709

• gjoni/map_align

  Contact map alignment

  Language:C++155

• sokrypton/map_align

  Contact map alignment

  Language:C++3915

• ShintaroMinami/mican

  Non-sequential structural alignment program for protein structure

  Language:C171

• guerler/gplus

  Non-sequential protein structure alignment algorithm. Takes two PDB structures and superimposes secondary structure elements in sequential and non-sequential order. Produces a superimposed PDB-file containing both structures.

  Language:C++12

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python12.9k2.3k

• kad-ecoli/TMalign

  This repo is outdated. Please use https://github.com/pylelab/USalign instead

  Language:C119

• ewbell94/TMalign

  TM-align and RNA-align C++ version

  Language:C++1

• halx/molprep

  PDB reader/writer in C, add hydrogens, etc.

  Language:C11

• paulaidt/biophysics

  Energy analysis exercise. Evaluate the relevance on folding of a series of polar interactions obtained from a protein 3D structure in PDB format

  1

• eyalperry88/pseudo-interfaces

  Identifying novel interface templates by examining the interior structure of resolved proteins.

  Language:Python1

• lazartomi/iPat

  Physicochemical patterns of residues in protein-proteins interfaces

  Language:Python33

• sebastiandaberdaku/PPIprediction

  software used in the paper "Exploring the potential of 3D Zernike descriptors and SVM for protein–protein interface prediction"

  Language:C++82

• JoaoRodrigues/interfacea

  An open-source library for the analysis of protein interactions.

  Language:Python295