Lisa-We

Lisa-We's Stars

• zhang-jiankun/LiMCA

  Language:Jupyter Notebook9

• FredHutch/sciCnT_manuscript_2023

  Analysis code and files associated with the sciCnT manuscript

  Language:Jupyter Notebook11

• alexchwong/SpliceWiz

  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.

  Language:R136

• Teichlab/scg_lib_structs

  Collections of library structure and sequence of popular single cell genomic methods

  Language:HTML41187

• rishvanth-kp/cna_utils

  Language:Python4

• rishvanth-kp/cfDNA_utils

  Language:Python2

• yezhengSTAT/CUTTag_tutorial

  Tutorial Website

  Language:R5117

• Henikoff/scCUT-Tag

  Language:Jupyter Notebook137

• epi2me-labs/pychopper

  cDNA read preprocessing

  Language:Python519

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.8k405

• BrooksLabUCSC/flair

  Full-Length Alternative Isoform analysis of RNA

  Language:Python20471

• christopher-vollmers/Mandalorion

  Pipeline to identify isoforms from full-length cDNA sequencing data

  Language:Python195

• epi2me-labs/wf-human-variation

  Language:Nextflow9241

• epi2me-labs/wf-single-cell

  Language:Python6833

• ucagenomix/sicelore

  Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.

  Language:Java7114

• rrwick/Porechop

  adapter trimmer for Oxford Nanopore reads

  Language:C++329124

• sdv-dev/TGAN

  Generative adversarial training for generating synthetic tabular data.

  Language:Python27791