Lisa-We's Stars
zhang-jiankun/LiMCA
FredHutch/sciCnT_manuscript_2023
Analysis code and files associated with the sciCnT manuscript
alexchwong/SpliceWiz
SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
Teichlab/scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
rishvanth-kp/cna_utils
rishvanth-kp/cfDNA_utils
yezhengSTAT/CUTTag_tutorial
Tutorial Website
Henikoff/scCUT-Tag
epi2me-labs/pychopper
cDNA read preprocessing
lh3/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
BrooksLabUCSC/flair
Full-Length Alternative Isoform analysis of RNA
christopher-vollmers/Mandalorion
Pipeline to identify isoforms from full-length cDNA sequencing data
epi2me-labs/wf-human-variation
epi2me-labs/wf-single-cell
ucagenomix/sicelore
Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.
rrwick/Porechop
adapter trimmer for Oxford Nanopore reads
sdv-dev/TGAN
Generative adversarial training for generating synthetic tabular data.