Series of scripts used during metaproteomics data analysis.
MetaNovo Software Pipeline: "MetaNovo is an open-source pipeline that integrates existing tools with a custom algorithm to produce targeted databases for mass spectrometry analysis. As inputs it requires raw mass spectrometry data in MGF format, and a UniProt FASTA file to search"
MaxQuant Software: "MaxQuant is a quantitative proteomics software package designed for analyzing large mass-spectrometric data sets."
A series of scripts were adapted from my colleagues, Matthys Potgieter and Argahavan Alistolani.
The DecisionTree.py script was adapted from Jason Wong (Towards data science)