Pinned Repositories
BBD_generead
Scripts and data for paper "Somatic mutations in benign breast disease tissues and association with breast cancer risk"
BioinformaticsPracticum2015
Slides for Bioinformatics practicum 2015
blog
just another blog
bringd32biology
Bring D3 visualization to biolgy
cbioportal
cBioPortal for Cancer Genomics
cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
dapars
DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)
SCdeconR
Deconvolution of bulk RNA-seq data using single-cell RNA-seq data as reference
XBSeq
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/XBSeq.html Contributions: https://github.com/Liuy12/XBSeq. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=XBSeq.
Liuy12's Repositories
Liuy12/SCdeconR
Deconvolution of bulk RNA-seq data using single-cell RNA-seq data as reference
Liuy12/XBSeq
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/XBSeq.html Contributions: https://github.com/Liuy12/XBSeq. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=XBSeq.
Liuy12/bringd32biology
Bring D3 visualization to biolgy
Liuy12/BBD_generead
Scripts and data for paper "Somatic mutations in benign breast disease tissues and association with breast cancer risk"
Liuy12/BioinformaticsPracticum2015
Slides for Bioinformatics practicum 2015
Liuy12/blog
just another blog
Liuy12/cbioportal
cBioPortal for Cancer Genomics
Liuy12/cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
Liuy12/dapars
DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)
Liuy12/deephyper_explore
Exploring deephyper.
Liuy12/DVboost
DVboost R package
Liuy12/DVboost_files
Annotation files and script used for DVboost
Liuy12/FFPEinput
Input recommendations for FFPE samples to generate adequate data for RNA-seq
Liuy12/gbm
Gradient boosted models
Liuy12/Images
Interesting images
Liuy12/Kaggle
Kaggle competition
Liuy12/liuy12.github.io
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
Liuy12/Liuy12.github.io.old
Start blogging now
Liuy12/MBDDiff
Liuy12/MBDDiff_files
Background annotation files used for MBDDiff
Liuy12/NIHGCN
Predicting cancer drug response using parallel heterogeneous graph convolutional networks with neighborhood interactions
Liuy12/PathDSP
Explainable Drug Sensitivity Prediction through Cancer Pathway Enrichment Scores
Liuy12/PDX_paper
datasets used for PDX paper
Liuy12/PracticalMachineLearningProject
Liuy12/scaden
Deep Learning based cell composition analysis with Scaden.
Liuy12/scRNA-seqVis
web application for scRNA-seq analysis enhanced with interactive visualization
Liuy12/Singularity
Singularity definitions that can be extended to support execution of community models.
Liuy12/STCRNASeq
Raw count and processed data for paper Chronic renal ischemia alters gene expression in swine scattered tubular-like cells
Liuy12/userInShiny
An example of shiny application with user authentication
Liuy12/XBSeq_files
XBSeq for testing differential expression for RNA-seq data