LiuzLab/AI_MARRVEL

Issues

• issue about Prepare HGMD-related data

  #104 opened 2 months ago by zhangyuan5422
  1

• gene_clinvar.csv file wrong version used for hg38

  #98 opened 2 months ago by SpicyChicken6
  0

• HPO database updating

  #92 opened 2 months ago by SpicyChicken6
  3

• Support customized black and white list for variants.

  #97 opened 3 months ago by zhandong
  0

• Support customized black and white list for variants

  #96 opened 3 months ago by zhandong
  0

• Version Control on AIM Website

  #95 opened 3 months ago by Mohammed-Hamdan1
  0

• AI MARRVEL HPC Issues - Internet Access Not Allowed

  #90 opened 4 months ago by yr542
  7

• Export button - frontend

  #91 opened 4 months ago by allyssonallan
  0

• VCF preprocessing requires too strict format

  #21 opened 4 months ago by arine
  2

• Simplify Installation: Add downloading bcftools/bedtools to Dockerfile

  #25 opened 4 months ago by arine
  0

• [NF] Reorganize out directory

  #77 opened 4 months ago by jylee-bcm
  0

• VCF called by other than DeepVariant produces errors

  #3 opened 4 months ago by arine
  0

• Error when all variants get filtered from gnomAD blacklist / empty VCF is given

  #19 opened 4 months ago by arine
  2

• Singularity profile

  #87 opened 4 months ago by allyssonallan
  9

• Optimize Output Formatting

  #88 opened 4 months ago by hyunhwan-bcm
  0

• AWS s3 link not working

  #86 opened 4 months ago by allyssonallan
  2

• Use `storeDir` to generate `net_norm_cor_GEneID.npz`

  #85 opened 5 months ago by jylee-bcm
  0

• merge nextflow_conversion branch to main

  #84 opened 5 months ago by hyunhwan-bcm
  1

• Implement data dependency checksum verification

  #53 opened 5 months ago by hyunhwan-bcm
  2

• Optimize bin/feature.py for memory usage and processing time

  #54 opened 5 months ago by hyunhwan-bcm
  2

• Create exome filter BED files and generation script

  #52 opened 5 months ago by hyunhwan-bcm
  1

• gene filter

  #66 opened 5 months ago by SpicyChicken6
  1

• Use the named output in the workflows

  #64 opened 5 months ago by jylee-bcm
  1

• Implement parameter validation for all required parameters

  #49 opened 5 months ago by hyunhwan-bcm
  0

• Support for gVCF Conversion and Index Building in Nextflow Pipeline

  #56 opened 5 months ago by hyunhwan-bcm
  4

• Add `--help` option to nextflow_conversion branch

  #47 opened 5 months ago by hyunhwan-bcm
  1

• Modify exonic filtering parameters and add bed filter option

  #48 opened 5 months ago by hyunhwan-bcm
  4

• Potential bug due to the old version of bcftools

  #36 opened 6 months ago by jylee-bcm
  1

• Question about VarTierDiseaseDBFalse.R

  #23 opened 6 months ago by hyunhwan-bcm
  0

• Error when running with hg38/GRCh38 samples

  #20 opened 7 months ago by yaseminbridges
  1

• AIM-NDG

  #16 opened 7 months ago by drmurdock
  1

• Unable to access Globus data

  #11 opened 8 months ago by julesjacobsen
  4

• Variant quality filter empties the VCF when users don't provide "PASS" designations

  #4 opened 8 months ago by coledeisseroth
  1

• AIM write-protects all of the files it makes

  #6 opened a year ago by coledeisseroth
  1

• Cannot download data dependencies in bulk

  #5 opened a year ago by coledeisseroth
  1

• Empty HPO does not generate OMIM phenotype file

  #2 opened a year ago by arine
  1