Pinned Repositories
COVID_homeless_modelling
Code for 'Comparison of infection control strategies to reduce COVID-19 outbreaks in homeless shelters in the United States: a simulation study'
covid_multi_strain
Code for 'Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia'
covid_remaining_burden
Code for 'Unexposed populations and potential COVID-19 hospitalisations and deaths in European countries as per data up to 21st November 2021'
COVIDVaccineModelling
Code for 'Risk factor targeting for vaccine prioritization during the COVID-19 pandemic'
QuantifyingVLnaturalHistory
R code for fitting multi-state Markov model and producing figures in 'Quantification of the natural history of visceral leishmaniasis and consequences for control'
seir
SEIR models with odin, dust and mcstate
SpatiotemporalModelling2004
Code for 'The role of case proximity in transmission of visceral leishmaniasis in a highly endemic village in Bangladesh'
VLageTrendsAnalysis
MATLAB code for performing statistical analyses and fitting reversible catalytic models in 'Age trends in asymptomatic and symptomatic Leishmania donovani infection in the Indian subcontinent: a review and analysis of data from diagnostic and epidemiological studies'
VLSpatiotemporalModelling
Code for 'Inferring transmission trees to guide targeting of interventions against visceral leishmaniasis and post–kala-azar dermal leishmaniasis'
WarwickVLmodel
MATLAB code for running simulations of Warwick visceral leishmaniasis transmission models in 'Policy recommendations from transmission modelling for the elimination of visceral leishmaniasis in the Indian subcontinent'
LloydChapman's Repositories
LloydChapman/VLSpatiotemporalModelling
Code for 'Inferring transmission trees to guide targeting of interventions against visceral leishmaniasis and post–kala-azar dermal leishmaniasis'
LloydChapman/covid_remaining_burden
Code for 'Unexposed populations and potential COVID-19 hospitalisations and deaths in European countries as per data up to 21st November 2021'
LloydChapman/seir
SEIR models with odin, dust and mcstate
LloydChapman/covid_multi_strain
Code for 'Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia'
LloydChapman/COVIDVaccineModelling
Code for 'Risk factor targeting for vaccine prioritization during the COVID-19 pandemic'
LloydChapman/QuantifyingVLnaturalHistory
R code for fitting multi-state Markov model and producing figures in 'Quantification of the natural history of visceral leishmaniasis and consequences for control'
LloydChapman/SpatiotemporalModelling2004
Code for 'The role of case proximity in transmission of visceral leishmaniasis in a highly endemic village in Bangladesh'
LloydChapman/VLageTrendsAnalysis
MATLAB code for performing statistical analyses and fitting reversible catalytic models in 'Age trends in asymptomatic and symptomatic Leishmania donovani infection in the Indian subcontinent: a review and analysis of data from diagnostic and epidemiological studies'
LloydChapman/california-coronavirus-data
The Los Angeles Times' independent tally of coronavirus cases in California.
LloydChapman/comix_data_clean
For cleaning, processing, and serving CoMix data.
LloydChapman/COVID_homeless_modelling
Code for 'Comparison of infection control strategies to reduce COVID-19 outbreaks in homeless shelters in the United States: a simulation study'
LloydChapman/WarwickVLmodel
MATLAB code for running simulations of Warwick visceral leishmaniasis transmission models in 'Policy recommendations from transmission modelling for the elimination of visceral leishmaniasis in the Indian subcontinent'
LloydChapman/BackendCovidApp
The backend to the COVID-19 RShiny app (github.com/EU-ECDC/RShinyCovidApp)
LloydChapman/covidest
LloydChapman/disease_transmission_workflow
Supplementary code for paper "Bayesian workflow for disease transmission model".
LloydChapman/EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
LloydChapman/EthiopiaVL
Code for 'Demographic characteristics and prevalence of asymptomatic Leishmania donovani infection in migrant workers working in an endemic area in Northwest Ethiopia'
LloydChapman/howto
LloydChapman/INLA-Workshop-Glasgow2019
Workshop on spatial and spatio-temporal models using INLA
LloydChapman/rcpp_intro
A Brief Introduction to Rcpp
LloydChapman/sir
LloydChapman/sircovid
LloydChapman/VL_prediction_paper
Analyses used in the paper "A spatio-temporal approach to short-term forecasting of visceral leishmaniasis diagnoses in India"
LloydChapman/VLstatisticalAnalysis
STATA code for cleaning data and performing statistical analyses in 'Variations in visceral leishmaniasis burden, mortality and the pathway to care within Bihar, India'
LloydChapman/WarwickVLmodelFitting
MATLAB code for fitting and performing predictions with Warwick visceral leishmaniasis transmission model in 'Elimination of visceral leishmaniasis in the Indian subcontinent: a comparison of predictions from three transmission models'