/ITCR2023-git

Primary LanguageHTML

README

Sure, I can help you create a README file for your script. Here's a basic outline:

Project Title

Description

This project includes a bash script that performs the following tasks:

  1. Sets the script to exit if any command fails.
  2. Sets the script to fail if any part of a pipeline fails.
  3. Changes the current directory to the directory of the script.
  4. Runs a Python script (00-download-data.py) that downloads the necessary data.
  5. Renders an R Markdown file (01-heatmap.Rmd) into a HTML document using Rscript.

Getting Started

Dependencies

  • Ensure you have Python3 installed.
  • Ensure you have R and Rscript installed.
  • Ensure you have the rmarkdown package installed in R.
  • Ensure you have Perl installed.

Installing

  • Clone the repository to your local machine.
  • Navigate to the directory containing the script.

Executing program

  • Run the script using the command bash script_name.sh.

Help

If you encounter any problems, please open an issue or contact the maintainer.

Authors

[Your Name] [Your Contact Information]

Version History

  • 0.1
    • Initial Release

License

This project is licensed under the [License Name] - see the LICENSE.md file for details.

Acknowledgments

  • [Acknowledgments]