Pinned Repositories
fsgui
Feedback and stimulation gui for real time experiment control
Gillespie_Neuron_2021
analysis code for Gillespie et al, Neuron 2021
Joshi_et_al_2023
Analysis code for Joshi et al 2023 Dynamic synchronization between hippocampal representations and stepping
rec_to_binaries
A python package that converts SpikeGadgets rec files in the Frank lab directory format to more useable binaries with the same directory format.
rec_to_nwb
Data Migration REC -> NWB 2.0 Service
rec_to_nwb_yaml_creator
Create YAML files for rec-to-NWB Conversion
spyglass
Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
spykshrk_realtime
track_linearization
Linearize 2D position to 1D using an HMM
trodes_to_nwb
Converts data from SpikeGadgets to the NWB Data Format
Loren Frank Lab at UCSF's Repositories
LorenFrankLab/spyglass
Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
LorenFrankLab/track_linearization
Linearize 2D position to 1D using an HMM
LorenFrankLab/spykshrk_realtime
LorenFrankLab/fsgui
Feedback and stimulation gui for real time experiment control
LorenFrankLab/position_tools
Tools for calculating smoothed 2D position, speed, head direction
LorenFrankLab/rec_to_binaries
A python package that converts SpikeGadgets rec files in the Frank lab directory format to more useable binaries with the same directory format.
LorenFrankLab/rec_to_nwb
Data Migration REC -> NWB 2.0 Service
LorenFrankLab/trodes_to_nwb
Converts data from SpikeGadgets to the NWB Data Format
LorenFrankLab/franklabnwb
Example notebook and related code to create NWB files from trodes .rec and associated files assuming franklab compatible naming system
LorenFrankLab/Gillespie_Neuron_2021
analysis code for Gillespie et al, Neuron 2021
LorenFrankLab/Joshi_et_al_2023
Analysis code for Joshi et al 2023 Dynamic synchronization between hippocampal representations and stepping
LorenFrankLab/non_local_detector
LorenFrankLab/realtime_decoder
LorenFrankLab/spyglass-paper
Code supporting Lee, Denovellis et al. (2024)
LorenFrankLab/Gillespie_eLife_2024
Analysis code for Gillespie et al, eLife 2024, "Neurofeedback training can modulate task-relevant memory replay rate in rats"
LorenFrankLab/ml_ms4alg
MountainSort v4
LorenFrankLab/rec_to_nwb_yaml_creator
Create YAML files for rec-to-NWB Conversion
LorenFrankLab/sorting-curations
holds text files with manual curation tags for spike sorting with mountainsort4
LorenFrankLab/spyglass-demo
One-click demo spyglass. Try it out here: https://spyglass.hhmi.2i2c.cloud/
LorenFrankLab/spyglass-dlc
LorenFrankLab/.github
LorenFrankLab/Discussions
Repository for Frank lab related discussions
LorenFrankLab/dorsal_intermediate_analysis
Rhino's analysis of multi-site dorsal and intermediate hippocampal recordings
LorenFrankLab/element-deeplabcut
DataJoint Element for behavioral analysis with DeepLabCut
LorenFrankLab/hhmi-spyglass-image
Image environment to showcase HHMI/FrankLorenLab/Spyglass
LorenFrankLab/jguides_2024
Jen's analysis of PFC and HPc recordings in rats
LorenFrankLab/mountainsort4
MountainSort4 spike sorting algorithm
LorenFrankLab/ndx-franklab-novela
LorenFrankLab/sortingview_old
Web app for viewing results of ephys spike sorting
LorenFrankLab/spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.