Pinned Repositories
starchip
Detection of Circular RNA and Fusions from RNA-Seq
ViralMine
A pipeline tool that mines unmapped RNA/DNA reads for viral sequences and predicts viral genotype (built for HBV)
gbm-case-study
Analysis for anti-PD-1 responsive GBM intratumoral heterogeneity case study
PB_AS
LabScripts
Simple scripts for day-to-day work
pipelines
Data processing & analysis pipelines used in the Losic Lab at Sinai
circdb
circular RNA database & visualization
losiclab.github.io
losic lab research
exoseq
Exome Sequencing analysis pipeline for the Losic Group at Mt Sinai
methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
LosicLab's Repositories
LosicLab/ViralMine
A pipeline tool that mines unmapped RNA/DNA reads for viral sequences and predicts viral genotype (built for HBV)
LosicLab/gbm-case-study
Analysis for anti-PD-1 responsive GBM intratumoral heterogeneity case study
LosicLab/exoseq
Exome Sequencing analysis pipeline for the Losic Group at Mt Sinai
LosicLab/LabScripts
Simple scripts for day-to-day work
LosicLab/circdb
circular RNA database & visualization
LosicLab/hlatyping
Precision HLA typing from next-generation sequencing data
LosicLab/losiclab.github.io
losic lab research
LosicLab/pipelines
Data processing & analysis pipelines used in the Losic Lab at Sinai
LosicLab/rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
LosicLab/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
LosicLab/starchip
Detection of Circular RNA and Fusions from RNA-Seq
LosicLab/PB_AS