Louis-MG

ade_script

anvio_pangenome_manual

Describes all the steps needed to go from a fasta to an annotated pangenome with anvio.

AugmentedReallityProject

BaseCount

Counts bases proportions in sequences. Parallel execution.

BinaryToText

C++ project to convert abundance into presence/absence pattern.

braker_error

Files uploaded to sole issue

CheckM

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

k-TSP-Classifier

Script that splits the dataset into k stratified sub-datasets for k-TSP cross-validation.

META-DIFF

This is the repository of the pipeline META-DIFF, which detects sequences in differential abundances between two conditions, and annotates them taxonomicaly and functionaly.

RecursiveBinaryDivisor

Script to use the mnhn-tree-tools in a specific way. Uses cluster_dbscan_pca to divide each cluster in two clusters, until further division cannot be done.

Louis-MG/ade_script

Louis-MG/anvio_pangenome_manual

Describes all the steps needed to go from a fasta to an annotated pangenome with anvio.

Louis-MG/AugmentedReallityProject

Louis-MG/BaseCount

Counts bases proportions in sequences. Parallel execution.

Louis-MG/BinaryToText

C++ project to convert abundance into presence/absence pattern.

Louis-MG/braker_error

Files uploaded to sole issue

Louis-MG/CheckM

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Louis-MG/k-TSP-Classifier

Script that splits the dataset into k stratified sub-datasets for k-TSP cross-validation.

Louis-MG/META-DIFF

This is the repository of the pipeline META-DIFF, which detects sequences in differential abundances between two conditions, and annotates them taxonomicaly and functionaly.

Louis-MG/RecursiveBinaryDivisor

Script to use the mnhn-tree-tools in a specific way. Uses cluster_dbscan_pca to divide each cluster in two clusters, until further division cannot be done.

Louis-MG/CheckM2

Assessing the quality of metagenome-derived genome bins using machine learning

Louis-MG/kmdiff

Differential k-mer analysis

Louis-MG/Knife

Louis-MG/Louis-MG

Config files for my GitHub profile.

Louis-MG/Metadbgwas

Beginig of the expansion of DBGWAS to a metagenomic scale.

Louis-MG/MicrobeAnnotator

Pipeline for metabolic annotation of microbial genomes

Louis-MG/MNHN-Tree-Tools

Louis-MG/Reindeer_segfault

Temporary repo created for the REINDEER github issue #14.

Louis-MG/rKmerBroom

🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets

Louis-MG/sgrep1.0

copy of tool by Stephen C. Losen because the code seems to have disappeared from sourceforge, duplicating from edygert just in case

Louis-MG/tp-interactomics

Louis-MG/tp-proteomics

Louis-MG/VDB_jupyter