This is some of the code which I am writing for my master's thesis: a microRNA target prediction model, built upon TargetScan, which takes expression profiles and multiple simultaneous microRNA-mRNA interactions into consideration. I will use the model for explaining part of the variability between cancer and normal cells gene expression.
The code does not work out-of-the-box because the data is not in the repository. If you are interested in running the code, or you have questions, do not hesitate to contact me!