LucasSilvaFerreira

biodf

Extending Pandas dataframe with bioinformatics operations

BOMBERMAN-Reinforcement-Learning-Q-Learning

Using Q-learning to teach an AI agent play a simple BomberMan clone.

Deep_autoencoder_RNA_structure

Using Convolutional AUTOENCODER to separate diferent RNA structures in the latent space

deepschisto

Deep learning CNN in schistossoma mansoni

EasyIllustratorLegends

Javascript code to add ticks to Illustrator figures

GMM_guassian_mixture_model_to_ATAC-SEQ

Using a GMM to separate reads from ATAC-seq experiment

Neural-evolution-agent-BLACKJACK

A Neural network Agent optimized by Evolutionary algorithms to play BlackJack or 21 (using only python/numpy/pandas)

pipeline_perturbseq_like

synthetic_deep_schisto

Creating a synthetic dataset to learn count parasites using deeplearning

DNA-Diffusion

🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨

LucasSilvaFerreira/pipeline_perturbseq_like

LucasSilvaFerreira/biodf

Extending Pandas dataframe with bioinformatics operations

LucasSilvaFerreira/EasyIllustratorLegends

Javascript code to add ticks to Illustrator figures

LucasSilvaFerreira/Perturb_Loader

Loading and manipulate guides, covariates and count data from the Perturb seq from Gasperini et all 2019

LucasSilvaFerreira/bigwigOperations

Handle bigwig files and plot results using python

LucasSilvaFerreira/BioNodes

creating a pipeline Python interface

LucasSilvaFerreira/colab_test

colab integration test

LucasSilvaFerreira/DiffProject

DiffProject

LucasSilvaFerreira/DnaDiff

DnaDiff

LucasSilvaFerreira/enformer_DNA_diff_files

enformer_DNA_diff_files

LucasSilvaFerreira/Enformer_DNA_Diffusion

LucasSilvaFerreira/epiForest

Random forest applied in epigenetic data

LucasSilvaFerreira/fancy_parser

test to parser

LucasSilvaFerreira/Foundry_XPbonito

foundry macro/module

LucasSilvaFerreira/globalPlot

Extract coordinates and global plot for pybigwig

LucasSilvaFerreira/GTFProcessing

GTFProcessing class using the gtf parse tool

LucasSilvaFerreira/homer_motif

LucasSilvaFerreira/IGVF_CRISPR_PIPELINES

Short Demo Crispr Pipelines

LucasSilvaFerreira/images_repo

images_repo

LucasSilvaFerreira/keep_cmds

keep bioinfo commands

LucasSilvaFerreira/monkey_pandas

moneky path for some utils pandas functions

LucasSilvaFerreira/normalizing_dnadiff

normalizing and selection

LucasSilvaFerreira/ondisc

Fast, universal, and intuitive (FUN) computing on large-scale single-cell data.

LucasSilvaFerreira/project_data

files from shendure and scmageck

LucasSilvaFerreira/sceptre

Robustly infer regulatory relationships in single-cell CRISPR screens.

LucasSilvaFerreira/SCEPTRE-old_version

old version sceptre

LucasSilvaFerreira/sd_custom_nodes

comfyUI

LucasSilvaFerreira/seqspecview

LucasSilvaFerreira/stable-diffusion

LucasSilvaFerreira/TOBIASlab

Run tobias pipeline on colab