Pinned Repositories
abcd-dicom2bids
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
brainbox-api-wrapper
wrapper to create csv file necessary for file uploads to BrainBox and run curl commands to link uploaded files to associated jsons
chiralitycorrection
correct swapped left-right hemisphere labels in nnUNet segmentations from BIBSNet
crossotope-s3-wrapper
crossotope-wrapper
dataladtest3
some default
dcan-infant-pipeline
The actual pipeline code, based on hcp, for human infants
dcan_rtd
du-audit
disk usage audit script for filesystems that filters and sorts by specified thresholds (eg age, size, etc)
sql_workshop
LuciMoore's Repositories
LuciMoore/sql_workshop
LuciMoore/abcd-dicom2bids
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
LuciMoore/brainbox-api-wrapper
wrapper to create csv file necessary for file uploads to BrainBox and run curl commands to link uploaded files to associated jsons
LuciMoore/chiralitycorrection
correct swapped left-right hemisphere labels in nnUNet segmentations from BIBSNet
LuciMoore/crossotope-s3-wrapper
LuciMoore/crossotope-wrapper
LuciMoore/dataladtest3
some default
LuciMoore/dcan-infant-pipeline
The actual pipeline code, based on hcp, for human infants
LuciMoore/dcan_rtd
LuciMoore/du-audit
disk usage audit script for filesystems that filters and sorts by specified thresholds (eg age, size, etc)
LuciMoore/EXITO_workshop
LuciMoore/infant-abcd-bids-pipeline
Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.
LuciMoore/infomap-s3-wrapper
LuciMoore/iterative-chirality-correction
LuciMoore/Lab_CoC_templates
This repository contains Code of Conduct templates for research laboratories and for science conferences.
LuciMoore/labhub
OHSU Open Science Workshop on tools and methods for building transparency within a lab
LuciMoore/LuciMoore.github.io
Personal website
LuciMoore/MRI_nonlinear_registration
LuciMoore/notebooks
Jupyter notebooks for tutorials, presentations, and machine learning projects
LuciMoore/open-data-registry
A registry of publicly available datasets on AWS
LuciMoore/project-pages
Fork this repo for a quick start. If "Project Timeline" or "License" appeared on your nav bar, Look Below!
LuciMoore/python_neurobootcamp