Pinned Repositories
aligater
AliGater is a flow cytometry analysis framework for creating automated gating solutions.
AGClassifier
Simple GUI classifier for AliGater quality control
AliGater-documentation
Documenation for the AliGater gating framework
AliGater_data_repository
Data for reproducibility/repeatability data for the manuscript AliGater: a framework to accelerate the development of computational pipelines for the analysis of large-scale flow cytometry data
HSPC-regulators-in-human-blood
AliGater gating strategy scripts for the paper "Genome-wide association study on 13,167 individuals identifies regulators of hematopoietic stem and progenitor cell levels in human blood"
interactive_manhattan
Python script to generate interactive bokeh manhattans that opens UCSC browser at the snp location
PathPoints
PathPoints is a Kivy app for keeping track of weighted points in a cyto- and/or histopathology lab. It's based on guidelines released by the Swedish Society of Pathology, https://svfp.se/, and is intended to be used by pathologists in Sweden to monitor their workload.
tsimchr
tsimchr_dependencies
Simulation code
ImmuneGWAS
scripts for analysis of GWAS results
LudvigEk's Repositories
LudvigEk/aligater
AliGater is a flow cytometry analysis framework for creating automated gating solutions.
LudvigEk/AGClassifier
Simple GUI classifier for AliGater quality control
LudvigEk/AliGater-documentation
Documenation for the AliGater gating framework
LudvigEk/AliGater_data_repository
Data for reproducibility/repeatability data for the manuscript AliGater: a framework to accelerate the development of computational pipelines for the analysis of large-scale flow cytometry data
LudvigEk/HSPC-regulators-in-human-blood
AliGater gating strategy scripts for the paper "Genome-wide association study on 13,167 individuals identifies regulators of hematopoietic stem and progenitor cell levels in human blood"
LudvigEk/interactive_manhattan
Python script to generate interactive bokeh manhattans that opens UCSC browser at the snp location
LudvigEk/PathPoints
PathPoints is a Kivy app for keeping track of weighted points in a cyto- and/or histopathology lab. It's based on guidelines released by the Swedish Society of Pathology, https://svfp.se/, and is intended to be used by pathologists in Sweden to monitor their workload.
LudvigEk/tsimchr
LudvigEk/tsimchr_dependencies
Simulation code