Luke-ebbis
Hello I am Sibbe Bakker, a recently graduated bioinformatician looking to learn more about the profession.
Wageningen University and Research (WUR)Elst
Pinned Repositories
cl-snake
Play snake in the terminal
complex-prediction
Complex prediction using combfold
datavzrd
A tool to create visual HTML reports from collections of CSV/TSV tables
Luke-ebbis.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
protein-structure-comparison
A quick pipeline for protein structure comparison
R-image-plotter
rosalind-exercises
A repro for my practice of rosalind
script
A list of utility scripts in various languages that can be downloaded and ran simply on linux systems
snakemake-pixi
Building snakemake workflows with pixi ✨
Luke-ebbis's Repositories
Luke-ebbis/complex-prediction
Complex prediction using combfold
Luke-ebbis/protein-structure-comparison
A quick pipeline for protein structure comparison
Luke-ebbis/rosalind-exercises
A repro for my practice of rosalind
Luke-ebbis/datavzrd
A tool to create visual HTML reports from collections of CSV/TSV tables
Luke-ebbis/Luke-ebbis.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Luke-ebbis/R-image-plotter
Luke-ebbis/snakemake-pixi
Building snakemake workflows with pixi ✨
Luke-ebbis/Luke-ebbis
Config files for my GitHub profile.
Luke-ebbis/AutoRDF2GML
AutoRDF2GML is a novel framework that semi-automatically transforms RDF data into heterogeneous graph datasets suitable for graph-based machine learning such as graph neural network (GNNs).
Luke-ebbis/CombFold
With pixi to manage dependencies
Luke-ebbis/combfold-benchmark
Benchmarking the combfold pipeline
Luke-ebbis/contact_map
Contact map analysis for biomolecules; based on MDTraj
Luke-ebbis/containers
Bioinformatics containers
Luke-ebbis/cozo
A transactional, relational-graph-vector database that uses Datalog for query. The hippocampus for AI!
Luke-ebbis/distance-map
Calculating distance maps between subunits of PDB or mCIF files
Luke-ebbis/EMBER3D
Ultra-fast in-silico structure mutation
Luke-ebbis/enpkg_full
The full enpkg workflow
Luke-ebbis/fisher-lisp
Fisher exact test implemented in lisp
Luke-ebbis/Is-Prime
O(1) Algorithm to check if number is prime that works in 95%+ cases.
Luke-ebbis/lisp-db
Luke-ebbis/mpi-snakemake-overview
snakemake presentation
Luke-ebbis/nemo
A fast in-memory rule engine
Luke-ebbis/NeuralPLexer
NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
Luke-ebbis/npdfr
A command-line PDF reader prioritizing fast searches.
Luke-ebbis/nplinker
A python framework for data mining microbial natural products by integrating genomics and metabolomics data
Luke-ebbis/RoseTTAFold-All-Atom
Luke-ebbis/snakemake-tutorial
An example workflow with snakemake
Luke-ebbis/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
Luke-ebbis/Stereochemical-Assesments
A repository to perform stereochemical assesments on PDB models generated by X-Ray Diffraction
Luke-ebbis/vtracer
Raster to Vector Graphics Converter