Pinned Repositories
grandR
R package for nucleotide conversion sequencing data analysis
Custom-Implementations-of-Bioinformatics-Algorithms
Custom implementations of various bioinformatics algorithms.
Evaluation-of-gap-filling-algorithms-for-genome-scale-metabolic-models
Msc thesis project. Evaluation of gap-filling tools for constraint-based, genome-scale models.
Pangenomic_QTL_Analysis
MSc Thesis code for the project 'Pangenomic QTL Analysis' performed in Wageningen University & Research.
RNASeq-Workflow
RNA-seq workflow for differential expression analysis. Uses kallisto and sleuth. Implemented in Snakemake. Tested on Arabidopsis. Starts with a transcriptome and reads, and generates a sleuth table and some plots.
Visualization-of-viral-passaging-data
Repository accompanying a shiny app intended for the visualization of viral passaging data with circos plots. Users can upload viral mutation data in tabular format. The mutations will be visualized on circos plots where tracks represent different combinations of lines and passages.
Lygeri-Sakellaridi's Repositories
Lygeri-Sakellaridi/Custom-Implementations-of-Bioinformatics-Algorithms
Custom implementations of various bioinformatics algorithms.
Lygeri-Sakellaridi/Evaluation-of-gap-filling-algorithms-for-genome-scale-metabolic-models
Msc thesis project. Evaluation of gap-filling tools for constraint-based, genome-scale models.
Lygeri-Sakellaridi/Pangenomic_QTL_Analysis
MSc Thesis code for the project 'Pangenomic QTL Analysis' performed in Wageningen University & Research.
Lygeri-Sakellaridi/RNASeq-Workflow
RNA-seq workflow for differential expression analysis. Uses kallisto and sleuth. Implemented in Snakemake. Tested on Arabidopsis. Starts with a transcriptome and reads, and generates a sleuth table and some plots.
Lygeri-Sakellaridi/Visualization-of-viral-passaging-data
Repository accompanying a shiny app intended for the visualization of viral passaging data with circos plots. Users can upload viral mutation data in tabular format. The mutations will be visualized on circos plots where tracks represent different combinations of lines and passages.