MADscientist314
Assistant professor specializing in bioinformatics at Baylor College of Medicine and Texas Children's Hospital.
Baylor College of MediciineHouston, Tx
Pinned Repositories
amniotic_fluid
Analysis of Amniotic fluid
analysis_of_microbiome_community_data_in_r
This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
COVIRT19_microbial
This repo is the hub for version control of the COVIRT19 microbial subgroup code on the TACC cluster
DBiology
A repository for my scripts in the computaional / digital biology course
hybrid_metagenomics
An idea that I am working on that intergrate 16S and WGS metagenomic sequencing
jupyter_scipy_cc2020
test dockerhub builds for container camp
Microbiome-Engineering
Analysis of the amplicon sequencing from the microbiome engineering project
tensorflow_basecaller
An attempt at using machine learning to improve the accuracy of basecalling from nanopore sequencing
txgen-ngs-tools
Tools for management and analysis of NGS data
MADscientist314's Repositories
MADscientist314/amniotic_fluid
Analysis of Amniotic fluid
MADscientist314/COVIRT19_microbial
This repo is the hub for version control of the COVIRT19 microbial subgroup code on the TACC cluster
MADscientist314/hybrid_metagenomics
An idea that I am working on that intergrate 16S and WGS metagenomic sequencing
MADscientist314/jupyter_scipy_cc2020
test dockerhub builds for container camp
MADscientist314/microbiome_bioinformatics_2020_tutorial_series
this github contains all of the scripts and slides presented during the 2020 microbiome bioinformatics tutorial series for the SMART program participants.
MADscientist314/tensorflow_basecaller
An attempt at using machine learning to improve the accuracy of basecalling from nanopore sequencing
MADscientist314/terminal_c_replays
a list of replays from terminal_c
MADscientist314/amplicon-seq-dada2
Snakemake pipeline for amplicon sequencing using dada2
MADscientist314/An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
MADscientist314/bio_G_dataset
MADscientist314/bioconda-recipes
Conda recipes for the bioconda channel.
MADscientist314/bowtie2_samtools
Dockerfile for bowtie2 v 2.4.1 and samtools 1.10 running on ubuntu 20.04
MADscientist314/data-_viz
MADscientist314/docker_images
repository for docker images that are hosted on docker hub
MADscientist314/hello-world
this is my first repository on github
MADscientist314/HMO
MADscientist314/IHCP
Aagaard Lab repo for the IHCP project
MADscientist314/Lab_meeting
Aagaard Lab meeting scripts for Intro to Bioinformatics
MADscientist314/lmatz
Matz_et_al_T2D_AD
MADscientist314/madscientist314.github.io
MADscientist314/MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
MADscientist314/mia
Microbiome analysis
MADscientist314/microbiome_binder_repo
test microbiome tutorial series binder
MADscientist314/NCBI_Hackathon_JOchum_Repo
place for me to push stuff for the hackathon
MADscientist314/nf-co.re
Code and files for the main nf-core website >>>
MADscientist314/portfolio
A public repository containing my updated cv and data visualization portfolio
MADscientist314/Rani_Perasani
MADscientist314/swagg
MADscientist314/TensorFlow
MADscientist314/Type_1_Diabetes_public
Maternal Type 1 Diabetes public repository for sharing Rscripts and data analyses