MBHallgren

PhD student in bioinformatics at the Genomic Epidemiology group at the Technical University of Denmark.

Pinned Repositories

cgeisolate
CGE isolate pipeline
Language:Python01
CGELabs
CGELabs application for Great Life
Language:JavaScript0 3 10
cgeutil
Generel utility tool for the Great Life Project
Language:Python00
CGPhylo
Core Genome Phylogenetics Tool
Language:Python1 2 00
great-life
Guide to laptops and ONT software for the great-life project
Language:Python0 2 00
KMADBInspector
Tool for inspecting a KMA database and fetching stats related to homology of an input sample.
Language:Python00
kmergenetyper
Accurate Gene Typer
Language:Python0 1 00
outbreak_maker
Outbreak_maker
Language:Python0 2 00
FullForcePlasmidAssembler
Full Force Plasmid Assembler Tool
Language:Python0 1 12
MINTyper
Language:Python60

MBHallgren's Repositories

MBHallgren/MINTyper
Language:Python60
MBHallgren/FullForcePlasmidAssembler
Full Force Plasmid Assembler Tool
Language:Python0 1 12