MDHDZ91
University of Chicago @ The Coleman Lab \nI am interested in bioinformatics and how their use can facilitate ecosystem studies.
Chicago, IL
Pinned Repositories
qiime2R
Import qiime2 artifacts to R
eASV-pipeline-for-515Y-926R
This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
515F-Y_926R_database_construction
A repository containing code for constructing qiime2 databases for the "Parada primers" (515F-Y / 926R). See linked OSF repo for the actual artifacts for specific qiime2 versions.
GL_Templates
Python scripts to make maps of the Laurentian Great Lakes
MiCoNE
The Microbial Co-occurrence Network Explorer
MMETSP_CCMs
scripts and HMM profiles used in the manuscript where we looked at gene response to increased CO2
python-ctd
Tools to load hydrographic data into pandas DataFrame
qiime2R
Import qiime2 artifacts to R
intro-programming-2022
Python course for students with no coding experience
python-ctd
Tools to load hydrographic data into pandas DataFrame
MDHDZ91's Repositories
MDHDZ91/515F-Y_926R_database_construction
A repository containing code for constructing qiime2 databases for the "Parada primers" (515F-Y / 926R). See linked OSF repo for the actual artifacts for specific qiime2 versions.
MDHDZ91/GL_Templates
Python scripts to make maps of the Laurentian Great Lakes
MDHDZ91/MiCoNE
The Microbial Co-occurrence Network Explorer
MDHDZ91/MMETSP_CCMs
scripts and HMM profiles used in the manuscript where we looked at gene response to increased CO2
MDHDZ91/python-ctd
Tools to load hydrographic data into pandas DataFrame
MDHDZ91/qiime2R
Import qiime2 artifacts to R