mg-download.py retrieves no data.

[phdegnan]

I managed to get everything installed with the help of sigmavirus24 author of requests-toolbelt - despite having an old distribution of requests (older than v2.5.1 as noted in #129).

However, perhaps I messed something up, because even though mg-download.py compiles at run time without fault now:

$ ./tools/bin/mg-download.py -h
NAME
    mg-download

VERSION
    1

SYNOPSIS
    mg-download [ --help, --user <user>, --passwd <password>, --token <oAuth token>, --project <project id>, --metagenome <metagenome id>, --file <file id> --dir <directory name> --list <list files for given id>]
...

I cannot get any data from the server using the example or any other metagenome data set:

$ ./tools/bin/mg-download.py --metagenome mgm4441680.3 --list
+------------+-----------+---------+----------+-----------+
| Metagenome | File Name | File ID | Checksum | Byte Size |
+------------+-----------+---------+----------+-----------+
+------------+-----------+---------+----------+-----------+

Anything I can do to troubleshoot this?

System data:

$  lsb_release -a 
No LSB modules are available.
Distributor ID: Ubuntu
Description:    Ubuntu 14.04.3 LTS
Release:    14.04

$ pip list
apt-xapian-index (0.45)
argparse (1.2.1)
biom-format (1.3.1)
chardet (2.0.1)
cogent (1.5.3)
colorama (0.2.5)
configobj (4.7.2)
cutadapt (1.2.1)
docutils (0.11)
emperor (0.9.3)
gdata (2.0.18)
html5lib (0.999)
Jinja2 (2.7.2)
Landscape-Client (14.12)
MarkupSafe (0.18)
matplotlib (1.3.1)
mpi4py (1.3.1)
nose (1.3.1)
numpy (1.7.1)
openpyxl (1.7.0)
PAM (0.4.2)
Pillow (2.3.0)
pip (1.5.4)
prettytable (0.7.2)
pycrypto (2.6.1)
pycups (1.9.66)
pycurl (7.19.3)
Pygments (1.6)
pygobject (3.12.0)
PyNAST (1.2)
pyOpenSSL (0.13)
pyparsing (2.0.1)
pyqi (0.3.1)
pyserial (2.6)
pysmbc (1.0.14.1)
python-apt (0.9.3.5ubuntu2)
python-dateutil (1.5)
python-debian (0.1.21-nmu2ubuntu2)
pytz (2012c)
qcli (0.1.0)
reportlab (3.0)
requests (2.2.1)
requests-toolbelt (0.5.1)
roman (2.0.0)
setuptools (3.3)
six (1.5.2)
Sphinx (1.2.2)
ssh-import-id (3.21)
system-service (0.1.6)
tax2tree (1.0)
Twisted-Core (13.2.0)
urllib3 (1.7.1)
wheel (0.24.0)
wsgiref (0.1.2)
zope.interface (4.0.5)

$ pip show requests

---
Name: requests
Version: 2.2.1
Location: /usr/lib/python2.7/dist-packages
Requires: 


$ pip show requests-toolbelt

---
Name: requests-toolbelt
Version: 0.5.1
Location: /data/software/PyM/lib/python2.7/site-packages/requests_toolbelt-0.5.1-py2.7.egg
Requires: requests

Thanks

[phdegnan]

Hey it works today. Was the server down over the weekend then?

Recommended code update: add an error message when server not available!

[wilke]

Please send emails to the mg-rast help desk or use the webform http://metagenomics.anl.gov/?page=Contact