Pinned Repositories
AlignmentStatistics
Old java repo from Tandy's lab that operates on an MSA and outputs some key summary statistics to a text file.
ASTRAL_GUI
lightweight GUI using wxPython that assembles a string to run ASTRAL from the command line.
misc_c_utilities
Random routines in C
pasta
PASTA (Practical Alignment using SATe and Transitivity)
Phylostrator
The Phylogeny Illustrator
pican_pi
Microbial Biodiversity Data Visualization
stamps_2024_assembly_tutorial
Tutorials for STAMPS 2024 related to metagenome QC, assembly and multiple genome alignment
tipp_dev_utils
TwitterAnalyticsWithR
Experimenting with the twittR package and Analytics
MGNute's Repositories
MGNute/ASTRAL_GUI
lightweight GUI using wxPython that assembles a string to run ASTRAL from the command line.
MGNute/Phylostrator
The Phylogeny Illustrator
MGNute/stamps_2024_assembly_tutorial
Tutorials for STAMPS 2024 related to metagenome QC, assembly and multiple genome alignment
MGNute/TwitterAnalyticsWithR
Experimenting with the twittR package and Analytics
MGNute/AlignmentStatistics
Old java repo from Tandy's lab that operates on an MSA and outputs some key summary statistics to a text file.
MGNute/cairo-win-build
Maintainable package for generating builds of cairo compiled binaries for windows.
MGNute/GCM
Graph Clustering Merger
MGNute/misc_c_utilities
Random routines in C
MGNute/pasta
PASTA (Practical Alignment using SATe and Transitivity)
MGNute/pican_pi
Microbial Biodiversity Data Visualization
MGNute/tipp_dev_utils
MGNute/fastapytools
Collection of python utilities for handling fasta, fastq and general multiple sequence datasets.
MGNute/ggplot2_code_generator_GUI
A GUI using wxPython that automatically generates code to plot with R and ggplot2
MGNute/gingr
MGNute/Image_Manager
automated management of image data for my brother's research project
MGNute/laika
Simple Python GNSS processing library
MGNute/MGNute.github.io
My personal website
MGNute/misc_utilities_and_code
Random Excel Based Templates, VBA Utilities, etc...
MGNute/parsnp
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes
MGNute/phyloutils
Collection of small utilities for multiple sequence alignment and phylogenetics
MGNute/sepp
Ensemble of HMM methods (SEPP, TIPP, UPP)
MGNute/stamps-tutorial