Pinned Repositories
CAT_dev
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
CAT_pack
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
cirtap
A command line utility for handling data from the PATRIC ftp site
DNNGIOR
Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling
Graphite
LMEMs in compacted colored De Bruijn graphs
phap
A snakemake workflow wrapping various phage host prediction tools
pvogs_function
A proof-of-concept, automated and reproducible pipeline for predicting functional associations between pVOGs.
social_niche_breadth_SNB
Calculate the Social Niche Breadth (SNB) score of all taxonomic lineages in a set of microbiomes.
viral_ecology_pipeline
viral ecology along gradient across biomes
Viromics-Workshop-MGX
VEO & MGX Groups's Repositories
MGXlab/CAT_pack
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
MGXlab/DNNGIOR
Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling
MGXlab/social_niche_breadth_SNB
Calculate the Social Niche Breadth (SNB) score of all taxonomic lineages in a set of microbiomes.
MGXlab/Viromics-Workshop-MGX
MGXlab/CAT_dev
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
MGXlab/Graphite
LMEMs in compacted colored De Bruijn graphs
MGXlab/pvogs_function
A proof-of-concept, automated and reproducible pipeline for predicting functional associations between pVOGs.
MGXlab/cirtap
A command line utility for handling data from the PATRIC ftp site
MGXlab/genes_synteny
This repository contains a tutorial and scripts to create a gene synteny and homology figure for a set of species.
MGXlab/phap
A snakemake workflow wrapping various phage host prediction tools
MGXlab/viral_ecology_pipeline
viral ecology along gradient across biomes
MGXlab/benchmark_assembly
Benchmarking and assembly
MGXlab/read_classifiers
Run metagenomic read classifiers on your input
MGXlab/Viral-Metagenomics-2021
MGXlab/virus_identification_tools_benchmarking
virus identification tools benchmarking
MGXlab/gtdb2cat
Prototypes for creating a CAT db for GTDB data
MGXlab/rothera_crassvirales
MGXlab/subgraphs
MGXlab/Viromics2024
MGXlab/Viromics2024-forked