Pinned Repositories
AlethieG
AlethieG - A metagenomic analysis tool - Adopted for Wochenende
filter-fastq
Filter reads from a FASTQ file using a list of identifiers.
haybaler
Haybaler: Collate/integrate reporting CSV or bam.txt files from the Wochenende pipeline https://github.com/MHH-RCUG/Wochenende
Heatmaps
Heatmap script to compare taxon abundance using output from the Wochenende pipeline
moosefs_ubuntu
Install MooseFS file system on Ubuntu 16.04 via Ansible
nf_reporter
Integrate metagenomic reports from our Wochenende metagenomics pipeline, raspir, growth rates and other tools using Nextflow
nf_wochenende
A nextflow version of the Wochenende reference metagenome binning and visualization pipeline
sc-analysis
UNDER DEVELOPMENT: Workflows for single-cell RNA-seq analysis
scrnaseq_app
UNDER DEVELOPMENT: Shiny app for visualisation of scRNASeq data
Wochenende
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
Research Core Unit Genomics at Hannover Medical School's Repositories
MHH-RCUG/Wochenende
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
MHH-RCUG/nf_wochenende
A nextflow version of the Wochenende reference metagenome binning and visualization pipeline
MHH-RCUG/haybaler
Haybaler: Collate/integrate reporting CSV or bam.txt files from the Wochenende pipeline https://github.com/MHH-RCUG/Wochenende
MHH-RCUG/Heatmaps
Heatmap script to compare taxon abundance using output from the Wochenende pipeline
MHH-RCUG/moosefs_ubuntu
Install MooseFS file system on Ubuntu 16.04 via Ansible
MHH-RCUG/nf_reporter
Integrate metagenomic reports from our Wochenende metagenomics pipeline, raspir, growth rates and other tools using Nextflow
MHH-RCUG/scrnaseq_app
UNDER DEVELOPMENT: Shiny app for visualisation of scRNASeq data
MHH-RCUG/AlethieG
AlethieG - A metagenomic analysis tool - Adopted for Wochenende
MHH-RCUG/filter-fastq
Filter reads from a FASTQ file using a list of identifiers.
MHH-RCUG/sc-analysis
UNDER DEVELOPMENT: Workflows for single-cell RNA-seq analysis
MHH-RCUG/scrnaseq
UNDER DEVELOPMENT: Workflow for single-cell RNA-seq analysis using Seurat
MHH-RCUG/scrnaseq_modular_extensions
UNDER DEVELOPMENT: Workflows for modular extensions of single-cell RNA-seq analysis performed with the scrnaseq script https://github.com/ktrns/scrnaseq
MHH-RCUG/WochenendeAlethieG
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3