When is plan_inference.pkl generated?
dzeego opened this issue · 3 comments
Hello @mibaumgartner,
After finishing the training (multiprocessing error at the last epoch persists) I am trying to run nndet_predict
on my test set which is located in the raw_splitted folder in imagesTs.
However, when i launch nndet_predict 0003 RetinaUNetV001_D3V001_3d --fold 0
I get:
FileNotFoundError: [Errno 2] No such file or directory: '/datadrive/nndetection_data/nndetection_models/Task0003_LesionDetection/RetinaUNetV001_D3V001_3d/fold0/plan_inference.pkl'
At what stage does the nndetection generate this file? and how can I mitigate this issue moving forward?
Also for some reason the val_analysis
, val_analysis_preprocessed
, val_predictions
, val_predictions_preprocessed
, val_results
, and val_results_preprocessed
folders were not generated. Is that normal?
Thank you in advance,
Best regards !
Dear @dzeego ,
did you run the training command with the --sweep
option? - that should generate the plan and results
nndet_sweep
can be used to perform this manually -> it will predict the validaiton cases and derive the best set of postprocessing paramters for the validation set (those are the inference parameters which are saved into the plan_inference.pkl.
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