MIC-DKFZ/nnUNet

Issues

• Discrepancy in KiTS19 spacing for reproducing 3D full resolution U-Net results

  #2519 opened 3 months ago
  0

• The resampling preprocessing makes the originally consistent image parameters data.shape, spacing': array inconsistent.

  #2518 opened 3 months ago
  1

• Multi-class training

  #2517 opened 3 months ago
  4

• RuntimeError: One or more background workers are no longer alive.

  #2516 opened 3 months ago
  2

• Troubleshooting inference for 2D

  #2515 opened 3 months ago
  0

• RuntimeError: One or more background workers are no longer alive. Exiting. Please check the print statements above for the actual error message

  #2514 opened 3 months ago
  0

• About resuming pre-processing

  #2513 opened 3 months ago
  2

• overfitting and low dice

  #2512 opened 3 months ago
  0

• Inquiry About Using DCM Sequences for nnU-Net Inference

  #2511 opened 3 months ago
  1

• Tiled inference (for large images)

  #2510 opened 3 months ago
  0

• Runtime Error running nnUNetv2_plan_and_preprocess (multiprocessing)

  #2509 opened 3 months ago
  0

• Error message after replacing PlainConvUNet

  #2507 opened 3 months ago
  0

• nnUNet with CUDA 11.8

  #2506 opened 3 months ago
  1

• Error training on docker container with python 3.7

  #2505 opened 3 months ago
  1

• nnunet inference speed up

  #2504 opened 3 months ago
  1

• Preprocessing and Installation - setuptools, cannot import name find_namespace_packages

  #2503 opened a month ago
  2

• Could not find requested nnunet trainer nnUNetTrainerUMambaBot in nnunetv2.training.nnUNetTrainer

  #2501 opened 3 months ago
  12

• free(): invalid pointer

  #2500 opened 3 months ago
  2

• Extracting u-net algorithm from nnunet pipeline

  #2498 opened 3 months ago
  1

• Question about run inference with pretrained model in V2

  #2497 opened 3 months ago
  3

• How can I use nnUnet for motion artifacts removal task of brain mri

  #2496 opened 3 months ago
  0

• About the model FLOPs and Parameters

  #2495 opened 3 months ago
  9

• How can I train a cascade model when I having splits less than 5?

  #2494 opened 3 months ago
  0

• Ensembling across different trainers for a dataset.

  #2493 opened 3 months ago
  3

• Tumors detected but the segmentation area is way smaller than it should be

  #2492 opened 3 months ago
  4

• Would like to save each label as a separate .nii.gz file during the inference phase？

  #2491 opened 23 days ago
  6

• LOGGING IN NNUNET?

  #2490 opened 2 months ago
  4

• Training on different MRI/CT orientation at once

  #2489 opened 4 months ago
  1

• nnUnet with CUDA Driver 10.1

  #2487 opened 3 months ago
  1

• Error when using ResEncUNet with nnUNetTrainer_DASegOrd0_NoMirroring

  #2486 opened 4 months ago
  1

• nnUNetv2_plan_and_preprocess : IndexError

  #2485 opened 2 months ago
  5

• RuntimeError: CUDA error: an illegal memory access was encountered

  #2484 opened 4 months ago
  2

• How to extract nnUNetv2 features

  #2483 opened 4 months ago
  3

• Multi-GPU nnUNet training

  #2482 opened 2 months ago
  2

• Unpacking dataset...

  #2481 opened 3 months ago
  1

• nnUNetTrainer_DASegOrd0_NoMirroring error on nnunetv2==2.5.1

  #2480 opened 4 months ago
  1

• Resampling along out of plane axis

  #2479 opened 4 months ago
  0

• NibabelIOWithReorient saves outputs with wrong orientation in special cases

  #2477 opened 4 months ago
  1

• problem with training

  #2476 opened 4 months ago
  1

• Error in documentation ? documentation/resenc_presets.md

  #2475 opened 4 months ago
  1

• Unexpected Convergence Dynamics in nnUNet with Increasing Epochs

  #2474 opened 4 months ago
  1

• How to save the optimized network framework

  #2473 opened 4 months ago
  0

• nnunetv2_plan_and_preprocess

  #2472 opened 4 months ago
  2

• autoPET II inference

  #2471 opened 3 months ago
  2

• Stuck at the beginning of training

  #2470 opened 4 months ago
  2

• Epoch time in training double that of benchmarking

  #2469 opened 3 months ago
  3

• Ensemble

  #2468 opened 4 months ago
  2

• about v1 how to inference in cpu?

  #2467 opened 20 days ago
  2

• is their other way to make the prediction with Adding batch size

  #2466 opened 4 months ago
  1

• slow training (learning) of new nnUNetv2

  #2465 opened 2 months ago
  1