ECCO-Darwin Github Repository
git clone git@github.com:MITgcm-contrib/ecco_darwin.git
--code_util--
/useful scripts
--dic--
/ECCO-DIC set-up
--doc-- contains some documentation files
Simulations:
--regions--
--bering_strait--
/v05: Bering Strait llc270 cut-out
--CCS--
/llc270: California Current System llc270 cut-out for kelp model development
--downscaling--
/util for downscaling
--GoA--
/v05: Gulf of Alaska llc270 cut-out for Takamitsu Ito
--GoM--
/: Gulf of Mexico lon-lat
--GulfGuinea--
/v05: Gulf of Guinea llc270 cut-out for COESSING
--LR17--
/llc270: La Rochelle coastal Ssstem cut-out for sediment model development
--mac_delta--
/LatLon: Mackenzie Delta lon-lat
/llc270: Mackenzie Delta llc270 cut-out
/llc4320: Mackenzie Delta llc4320 cut-out
--Med--
/v05: Mediteranean and Black Sea llc270 cut-out for HCMR
--RedSea--
/v05: Red Sea llc270 cut-out for KAUST
/v05_coral: Red Sea llc270 cut-out including model for coral reefs
--totten--
/llc1080: east Antarctica totten lon-lat
--v02--
/cs510_brix: optimized solution described in Brix et al. (2015)
/manizza_2019: Manizza et al. (2019) simulation
--v03--
/cs510_brix: unpublished ECCO-Darwin v3 with linear piston velocity and revised ICs
/cs510_latest: Same as above with newer (checkpoint66o 2018/01/30) MITgcm code
--v04--
/3deg: 3 degree verification experiment with budget scripts
/llc270_devel: test solution with nonlinear dissolution and benthic DIC/ALK fluxes
/llc270_JAMES_paper: Carroll et al. 2020 (JAMES) solution
/llc270_JAMES_budget: same as above with diagnostics for closing budgets
--v05--
/1deg: 1 degree solution based on ECCO V4r4/V4r5
/1deg_CDR: 1 degree solution based on ECCO V4r4/V4r5 for mCDR simulations
/1deg_RADIv2: 1 degree solution based on ECCO V4r4/V4r5 including RADIv2 sediment metamodel
/3deg: 3 degree verification experiment w/ Darwin 3 and budget scripts
/3deg_CDR_MacroA: Kay's macroalgae (kelp) code development set-up
/llc270: Carroll et al. 2022 (GBC) solution w/ Darwin 3
/llc270_jra55do: same as above but with JRA55-do daily, point-source runoff
/llc270_jra55do_mangroves: same as above but with mangrove carbon export
/llc270_jra55do_nutrients: same as above but with DOC, DON, and DOP surface forcing
/llc270_N2O: same as llc270 but with total and thermal N2O, argon, and thermal oxygen
/llc270_sediment: same as llc270 above but with RADI sediment model
--v06--
/1deg: 1 degree solution based on ECCO V4r5
/llc270: v05 llc270 w/ Darwin upgrades and new ecosystem, BGC runoff, RADI sediment model,
pH fix and updated solver, hydrothermal vent iron forcing, and radiative transfer package
**Notes**
v02 to v04 use Darwin 1, v05 onward uses Darwin 3
**Team Github Guidelines**
When updating ECCO-Darwin code/setup, or anything that may impact ECCO-Darwin:
1.) Check in readme.txt file(s) with updated instructions, along with any other input files that are needed.
2.) Test updated ECCO-Darwin from scratch by checking out fresh MITgcm code,
and following the instructions line-by-line in the readme.txt file(s).