ML4GLand

.github

awesome-dl4g

(Soon to be) community-curated list of software packages and data resources for deep learning for genomics (DL4G)

EUGENe

Elucidating the Utility of Genomic Elements with Neural Nets

EUGENe_paper

Code for generating the figures and results presented in the manuscript EUGENe: A Python toolkit for sequence activity prediction and analysis

SeqData

Annotated sequence data

SeqDatasets

Datasets for benchmarking, testing and developing in EUGENe

SeqExplainer

Interpreting sequence-to-function machine learning models

SeqPro

Genomic sequence preprocessing toolkit

tutorials

A set of tutorials for how to use all the tools in ML4GLand

use_cases

Repository documenting applications of the ML4GLand suite on published datasets

ML4GLand/EUGENe

Elucidating the Utility of Genomic Elements with Neural Nets

ML4GLand/SeqPro

Genomic sequence preprocessing toolkit

ML4GLand/SeqData

Annotated sequence data

ML4GLand/EUGENe_paper

Code for generating the figures and results presented in the manuscript EUGENe: A Python toolkit for sequence activity prediction and analysis

ML4GLand/SeqExplainer

Interpreting sequence-to-function machine learning models

ML4GLand/tutorials

A set of tutorials for how to use all the tools in ML4GLand

ML4GLand/awesome-dl4g

(Soon to be) community-curated list of software packages and data resources for deep learning for genomics (DL4G)

ML4GLand/SeqDatasets

Datasets for benchmarking, testing and developing in EUGENe

ML4GLand/use_cases

Repository documenting applications of the ML4GLand suite on published datasets

ML4GLand/.github

ML4GLand/MotifData

Motif representation and analysis toolkit in Python

ML4GLand/external

Code snippets and wrappers for use of external tools without forking repos