Failed to build psbody-mesh

Question

Failed to build psbody-mesh

chouchunan opened this issue 6 months ago · 0 comments

(mymesh) user@user-System-Product-Name:~/下載/mesh-master$ BOOST_INCLUDE_DIRS=/usr/include make all
----- [ mesh_package ] Installing with the interpreter /home/user/anaconda3/envs/mymesh/bin/python (version 3.9.19)
Requirement already satisfied: setuptools in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from -r requirements.txt (line 1)) (70.0.0)
Requirement already satisfied: numpy in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from -r requirements.txt (line 2)) (2.0.0)
Requirement already satisfied: matplotlib in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from -r requirements.txt (line 3)) (3.9.0)
Requirement already satisfied: scipy in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from -r requirements.txt (line 4)) (1.13.1)
Requirement already satisfied: pyopengl in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from -r requirements.txt (line 5)) (3.1.7)
Requirement already satisfied: pillow in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from -r requirements.txt (line 6)) (10.3.0)
Requirement already satisfied: pyzmq in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from -r requirements.txt (line 7)) (26.0.3)
Requirement already satisfied: pyyaml in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from -r requirements.txt (line 8)) (6.0.1)
Requirement already satisfied: opencv-python in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from -r requirements.txt (line 9)) (4.10.0.84)
Requirement already satisfied: contourpy>=1.0.1 in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (1.2.1)
Requirement already satisfied: cycler>=0.10 in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (0.12.1)
Requirement already satisfied: fonttools>=4.22.0 in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (4.53.0)
Requirement already satisfied: kiwisolver>=1.3.1 in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (1.4.5)
Requirement already satisfied: packaging>=20.0 in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (24.1)
Requirement already satisfied: pyparsing>=2.3.1 in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (3.1.2)
Requirement already satisfied: python-dateutil>=2.7 in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (2.9.0.post0)
Requirement already satisfied: importlib-resources>=3.2.0 in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 3)) (6.4.0)
Requirement already satisfied: zipp>=3.1.0 in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from importlib-resources>=3.2.0->matplotlib->-r requirements.txt (line 3)) (3.19.2)
Requirement already satisfied: six>=1.5 in /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages (from python-dateutil>=2.7->matplotlib->-r requirements.txt (line 3)) (1.16.0)
Package Version

alabaster 0.7.16
Babel 2.15.0
certifi 2024.6.2
charset-normalizer 3.3.2
contourpy 1.2.1
cycler 0.12.1
docutils 0.21.2
fonttools 4.53.0
idna 3.7
imagesize 1.4.1
importlib_metadata 7.1.0
importlib_resources 6.4.0
Jinja2 3.1.4
kiwisolver 1.4.5
MarkupSafe 2.1.5
matplotlib 3.9.0
numpy 2.0.0
opencv-python 4.10.0.84
packaging 24.1
pillow 10.3.0
pip 24.0
psbody-mesh 0.4
Pygments 2.18.0
PyOpenGL 3.1.7
pyparsing 3.1.2
python-dateutil 2.9.0.post0
PyYAML 6.0.1
pyzmq 26.0.3
requests 2.32.3
scipy 1.13.1
setuptools 70.0.0
six 1.16.0
snowballstemmer 2.2.0
Sphinx 7.3.7
sphinx-bootstrap-theme 0.8.1
sphinxcontrib-applehelp 1.0.8
sphinxcontrib-devhelp 1.0.6
sphinxcontrib-htmlhelp 2.0.5
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.7
sphinxcontrib-serializinghtml 1.1.10
tomli 2.0.1
urllib3 2.2.2
wheel 0.43.0
zipp 3.19.2
Using pip 24.0 from /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages/pip (python 3.9)
Processing /home/user/下載/mesh-master
Running command python setup.py egg_info
[VERSION] read version is 0.4
/home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages/setuptools/init.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

      ********************************************************************************
      Requirements should be satisfied by a PEP 517 installer.
      If you are using pip, you can try `pip install --use-pep517`.
      ********************************************************************************

!!
dist.fetch_build_eggs(dist.setup_requires)
/home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages/setuptools/dist.py:679: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated.
!!

      ********************************************************************************
      Please replace its usage with implicit namespaces (PEP 420).

      See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages for details.
      ********************************************************************************

!!
ep.load()(self, ep.name, value)
running egg_info
creating /tmp/pip-pip-egg-info-__g1gnrr/psbody_mesh.egg-info
writing /tmp/pip-pip-egg-info-__g1gnrr/psbody_mesh.egg-info/PKG-INFO
writing dependency_links to /tmp/pip-pip-egg-info-__g1gnrr/psbody_mesh.egg-info/dependency_links.txt
writing namespace_packages to /tmp/pip-pip-egg-info-__g1gnrr/psbody_mesh.egg-info/namespace_packages.txt
writing requirements to /tmp/pip-pip-egg-info-__g1gnrr/psbody_mesh.egg-info/requires.txt
writing top-level names to /tmp/pip-pip-egg-info-__g1gnrr/psbody_mesh.egg-info/top_level.txt
writing manifest file '/tmp/pip-pip-egg-info-__g1gnrr/psbody_mesh.egg-info/SOURCES.txt'
/home/user/下載/mesh-master/setup.py:145: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

      ********************************************************************************
      Please avoid running ``setup.py`` directly.
      Instead, use pypa/build, pypa/installer or other
      standards-based tools.

      See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
      ********************************************************************************

!!
return _install.initialize_options(self)
reading manifest file '/tmp/pip-pip-egg-info-__g1gnrr/psbody_mesh.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file '/tmp/pip-pip-egg-info-__g1gnrr/psbody_mesh.egg-info/SOURCES.txt'
Preparing metadata (setup.py) ... done
Building wheels for collected packages: psbody-mesh
Running command python setup.py bdist_wheel
[VERSION] read version is 0.4
/home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages/setuptools/init.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

      ********************************************************************************
      Requirements should be satisfied by a PEP 517 installer.
      If you are using pip, you can try `pip install --use-pep517`.
      ********************************************************************************

!!
dist.fetch_build_eggs(dist.setup_requires)
/home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages/setuptools/dist.py:679: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated.
!!

      ********************************************************************************
      Please replace its usage with implicit namespaces (PEP 420).

      See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages for details.
      ********************************************************************************

!!
ep.load()(self, ep.name, value)
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-39
creating build/lib.linux-x86_64-cpython-39/psbody
copying psbody-mesh-namespace/init.py -> build/lib.linux-x86_64-cpython-39/psbody
creating build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/fonts.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/utils.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/texture.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/lines.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/errors.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/mesh.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/version.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/sphere.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/meshviewer.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/init.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/landmarks.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/arcball.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/colors.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/processing.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
copying mesh/search.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh
creating build/lib.linux-x86_64-cpython-39/psbody/mesh/topology
copying mesh/topology/connectivity.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/topology
copying mesh/topology/init.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/topology
copying mesh/topology/decimation.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/topology
copying mesh/topology/subdivision.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/topology
copying mesh/topology/linear_mesh_transform.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/topology
creating build/lib.linux-x86_64-cpython-39/psbody/mesh/geometry
copying mesh/geometry/triangle_area.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/geometry
copying mesh/geometry/rodrigues.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/geometry
copying mesh/geometry/vert_normals.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/geometry
copying mesh/geometry/tri_normals.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/geometry
copying mesh/geometry/init.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/geometry
copying mesh/geometry/barycentric_coordinates_of_projection.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/geometry
copying mesh/geometry/cross_product.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/geometry
creating build/lib.linux-x86_64-cpython-39/psbody/mesh/serialization
copying mesh/serialization/serialization.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/serialization
copying mesh/serialization/init.py -> build/lib.linux-x86_64-cpython-39/psbody/mesh/serialization
running build_ext
/home/user/下載/mesh-master/setup.py:145: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

      ********************************************************************************
      Please avoid running ``setup.py`` directly.
      Instead, use pypa/build, pypa/installer or other
      standards-based tools.

      See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
      ********************************************************************************

!!
return _install.initialize_options(self)
[CGAL] deflating cgal from "mesh/thirdparty/CGAL-4.7.tar.gz" to "/home/user/下載/mesh-master/build/temp.linux-x86_64-cpython-39"
building 'psbody.mesh.aabb_normals' extension
creating build/temp.linux-x86_64-cpython-39/mesh
creating build/temp.linux-x86_64-cpython-39/mesh/src
gcc -pthread -B /home/user/anaconda3/envs/mymesh/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/user/anaconda3/envs/mymesh/include -fPIC -O2 -isystem /home/user/anaconda3/envs/mymesh/include -fPIC -DNDEBUG=1 -DCGAL_NDEBUG=1 -DMESH_CGAL_AVOID_COMPILED_VERSION=1 -DCGAL_HAS_NO_THREADS=1 -DCGAL_NO_AUTOLINK_CGAL=1 -Imesh/src -I/home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages/numpy/_core/include -I/home/user/下載/mesh-master/build/temp.linux-x86_64-cpython-39/CGAL-4.7/include -I/home/user/anaconda3/envs/mymesh/include/python3.9 -c mesh/src/aabb_normals.cpp -o build/temp.linux-x86_64-cpython-39/mesh/src/aabb_normals.o -O3 -fopenmp
In file included from /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909:0,
from /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
from /home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
from mesh/src/aabb_normals.cpp:4:
/home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with "
^~~~~~~
mesh/src/aabb_normals.cpp: In function ‘PyObject* aabbtree_normals_nearest(PyObject*, PyObject*)’:
mesh/src/aabb_normals.cpp:118:41: error: cannot convert ‘PyObject* {aka _object*}’ to ‘const PyArrayObject* {aka const tagPyArrayObject_fields*}’ for argument ‘1’ to ‘npy_intp* PyArray_DIMS(const PyArrayObject*)’
npy_intp* v_dims = PyArray_DIMS(py_v);
^
mesh/src/aabb_normals.cpp:119:41: error: cannot convert ‘PyObject* {aka _object*}’ to ‘const PyArrayObject* {aka const tagPyArrayObject_fields*}’ for argument ‘1’ to ‘npy_intp* PyArray_DIMS(const PyArrayObject*)’
npy_intp* n_dims = PyArray_DIMS(py_n);
^
mesh/src/aabb_normals.cpp:132:91: error: cannot convert ‘PyObject* {aka _object*}’ to ‘const PyArrayObject* {aka const tagPyArrayObject_fields*}’ for argument ‘1’ to ‘void* PyArray_DATA(const PyArrayObject*)’
array<double, 3>* m_sample_points=reinterpret_cast<array<double,3>>(PyArray_DATA(py_v));
^
mesh/src/aabb_normals.cpp:133:86: error: cannot convert ‘PyObject {aka _object*}’ to ‘const PyArrayObject* {aka const tagPyArrayObject_fields*}’ for argument ‘1’ to ‘void* PyArray_DATA(const PyArrayObject*)’
array<double, 3>* m_sample_n=reinterpret_cast<array<double,3>>(PyArray_DATA(py_n));
^
mesh/src/aabb_normals.cpp:150:36: warning: narrowing conversion of ‘S’ from ‘size_t {aka long unsigned int}’ to ‘npy_intp {aka long int}’ inside { } [-Wnarrowing]
npy_intp result1_dims[] = {1, S};
^
mesh/src/aabb_normals.cpp:154:81: error: cannot convert ‘PyObject {aka _object*}’ to ‘const PyArrayObject* {aka const tagPyArrayObject_fields*}’ for argument ‘1’ to ‘void* PyArray_DATA(const PyArrayObject*)’
uint32_t* closest_triangles=reinterpret_cast<uint32_t*>(PyArray_DATA(result1));
^
mesh/src/aabb_normals.cpp:157:40: warning: narrowing conversion of ‘S’ from ‘size_t {aka long unsigned int}’ to ‘npy_intp {aka long int}’ inside { } [-Wnarrowing]
npy_intp result2_dims[] = {S, 3};
^
mesh/src/aabb_normals.cpp:159:78: error: cannot convert ‘PyObject* {aka _object*}’ to ‘const PyArrayObject* {aka const tagPyArrayObject_fields*}’ for argument ‘1’ to ‘void* PyArray_DATA(const PyArrayObject*)’
closest_point=reinterpret_cast<array<double,3>*>(PyArray_DATA(result2));
^
error: command '/usr/bin/gcc' failed with exit code 1
error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.
full command: /home/user/anaconda3/envs/mymesh/bin/python3.9 -u -c '
exec(compile('"'"''"'"''"'"'

This is -- a caller that pip uses to run setup.py

- It imports setuptools before invoking setup.py, to enable projects that directly

import from `distutils.core` to work with newer packaging standards.

- It provides a clear error message when setuptools is not installed.

- It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so

setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:

manifest_maker: standard file '"'"'-c'"'"' not found".

- It generates a shim setup.py, for handling setup.cfg-only projects.

import os, sys, tokenize

try:
import setuptools
except ImportError as error:
print(
"ERROR: Can not execute setup.py since setuptools is not available in "
"the build environment.",
file=sys.stderr,
)
sys.exit(1)

file = %r
sys.argv[0] = file

if os.path.exists(file):
filename = file
with tokenize.open(file) as f:
setup_py_code = f.read()
else:
filename = ""
setup_py_code = "from setuptools import setup; setup()"

exec(compile(setup_py_code, filename, "exec"))
'"'"''"'"''"'"' % ('"'"'/home/user/下載/mesh-master/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-sfpnu031
cwd: /home/user/下載/mesh-master/
Building wheel for psbody-mesh (setup.py) ... error
ERROR: Failed building wheel for psbody-mesh
Running setup.py clean for psbody-mesh
Running command python setup.py clean
[VERSION] read version is 0.4
/home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages/setuptools/init.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

      ********************************************************************************
      Requirements should be satisfied by a PEP 517 installer.
      If you are using pip, you can try `pip install --use-pep517`.
      ********************************************************************************

!!
dist.fetch_build_eggs(dist.setup_requires)
/home/user/anaconda3/envs/mymesh/lib/python3.9/site-packages/setuptools/dist.py:679: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated.
!!

      ********************************************************************************
      Please replace its usage with implicit namespaces (PEP 420).

      See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages for details.
      ********************************************************************************

!!
ep.load()(self, ep.name, value)
running clean
removing 'build/temp.linux-x86_64-cpython-39' (and everything under it)
removing 'build/lib.linux-x86_64-cpython-39' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
removing 'build'
Failed to build psbody-mesh
ERROR: Could not build wheels for psbody-mesh, which is required to install pyproject.toml-based projects
Makefile:5: recipe for target 'all' failed
make: *** [all] Error 1

This is -- a caller that pip uses to run setup.py

- It imports setuptools before invoking setup.py, to enable projects that directly

import from distutils.core to work with newer packaging standards.

- It provides a clear error message when setuptools is not installed.

- It sets sys.argv[0] to the underlying setup.py, when invoking setup.py so

setuptools doesn'"'"'t think the script is -c. This avoids the following warning:

manifest_maker: standard file '"'"'-c'"'"' not found".

- It generates a shim setup.py, for handling setup.cfg-only projects.

import from `distutils.core` to work with newer packaging standards.

- It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so

setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: