Pinned Repositories
BASiCS
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version (forked to the unit's github)
coloc
Repo for the R package coloc (forked to the unit's github)
DGP4LCF
Model high-dimensional gene expression trajectories using dynamic factor analysis with dependent Gaussian processes (forked from https://github.com/jcai-1122/DGP4LCF)
DRMR
Doubly-Ranked Stratification in Mendelian Randomization
hyprcoloc
Hypothesis prioritisation in multi-trait colocalization
mrclust
R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
msm
The msm R package for continuous-time multi-state modelling of panel data (forked to the unit's github)
navmix
real-time-mcmc
MCMC version of the UKHSA/Cambridge real-time model for epidemic surveillance. Forked on 29/08/2023 but not kept up to date - for the latest version, see https://gitlab.com/pjbirrell/real-time-mcmc , and for background information see https://royalsocietypublishing.org/doi/full/10.1098/rstb.2020.0279
SUMnlmr
non-linear MR for semi-summarized data
Medical Research Council Biostatistics Unit at the University of Cambridge's Repositories
MRCBSU/hyprcoloc
Hypothesis prioritisation in multi-trait colocalization
MRCBSU/mrclust
R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
MRCBSU/bcrm
bcrm (forked to the unit's github)
MRCBSU/demo_AMD
MRCBSU/flashfm
Flashfm (flexible and shared information fine-mapping) uses GWAS summary statistics to jointly fine-map genetic associations for several related quantitative traits in a Bayesian framework that leverages information between the traits.
MRCBSU/flashfm-ivis
flashfm-ivis: interactive visualisation for fine-mapping of multiple quantitative traits
MRCBSU/mvmr-measurement-error